Gene annotation
Transcriptome id Sobic.010G269500.1
Synonym Sb10g030450
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1W0VV36
Pfam PF00400
Panther DB PTHR15574 PTHR15574:SF38
NCBI CDD KOG1334; WD40 repeat protein
KEGG Orthology K11804; DDB1- and CUL4-associated factor 8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G38480 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os06g50880.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041708
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G269500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G050400 - K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5
2 Sobic.003G189800 expressed protein K14291: phosphorylated adapter RNA export protein
3 Sobic.004G300500 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
5 Sobic.001G362800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K06940: uncharacterized protein
6 Sobic.006G157300 expressed protein -
7 Sobic.004G242300 expressed protein -
8 Sobic.001G316700 amine oxidase, putative, expressed -
9 Sobic.003G365400 DUF584 domain containing protein, putative, expressed -
10 Sobic.007G013500 expressed protein -
11 Sobic.001G429100 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
12 Sobic.003G230300 expressed protein -
13 Sobic.002G264500 expressed protein -
14 Sobic.004G034000 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed -
15 Sobic.003G176900 BAH domain containing protein, expressed -
16 Sobic.004G134500 expressed protein -
17 Sobic.004G223900 nucleolar matrix protein-related, putative, expressed -
18 Sobic.005G073500 B3 DNA binding domain containing protein, expressed -
19 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
20 Sobic.002G059600 OsFBX237 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic010G269500 Sobic010G269500 Sobic007G050400 Sobic007G050400 Sobic010G269500--Sobic007G050400 Sobic003G189800 Sobic003G189800 Sobic010G269500--Sobic003G189800 Sobic004G300500 Sobic004G300500 Sobic010G269500--Sobic004G300500 Sobic003G037900 Sobic003G037900 Sobic010G269500--Sobic003G037900 Sobic001G362800 Sobic001G362800 Sobic010G269500--Sobic001G362800 Sobic006G157300 Sobic006G157300 Sobic010G269500--Sobic006G157300 Sobic004G242300 Sobic004G242300 Sobic010G269500--Sobic004G242300 Sobic001G316700 Sobic001G316700 Sobic010G269500--Sobic001G316700 Sobic003G365400 Sobic003G365400 Sobic010G269500--Sobic003G365400 Sobic001G237700 Sobic001G237700 Sobic007G050400--Sobic001G237700 Sobic007G050400--Sobic010G269500 Sobic002G337300 Sobic002G337300 Sobic007G050400--Sobic002G337300 Sobic001G423700 Sobic001G423700 Sobic007G050400--Sobic001G423700 Sobic007G050400--Sobic003G037900 Sobic004G134500 Sobic004G134500 Sobic007G050400--Sobic004G134500 Sobic004G327400 Sobic004G327400 Sobic007G050400--Sobic004G327400 Sobic007G013500 Sobic007G013500 Sobic007G050400--Sobic007G013500 Sobic009G255300 Sobic009G255300 Sobic007G050400--Sobic009G255300 Sobic005G021200 Sobic005G021200 Sobic003G189800--Sobic005G021200 Sobic003G189800--Sobic010G269500 Sobic004G059100 Sobic004G059100 Sobic003G189800--Sobic004G059100 Sobic001G141700 Sobic001G141700 Sobic003G189800--Sobic001G141700 Sobic002G140900 Sobic002G140900 Sobic003G189800--Sobic002G140900 Sobic006G245200 Sobic006G245200 Sobic003G189800--Sobic006G245200 Sobic010G042200 Sobic010G042200 Sobic003G189800--Sobic010G042200 Sobic010G262900 Sobic010G262900 Sobic003G189800--Sobic010G262900 Sobic001G021700 Sobic001G021700 Sobic003G189800--Sobic001G021700 Sobic003G230300 Sobic003G230300 Sobic004G300500--Sobic003G230300 Sobic004G300500--Sobic001G362800 Sobic006G053000 Sobic006G053000 Sobic004G300500--Sobic006G053000 Sobic010G189800 Sobic010G189800 Sobic004G300500--Sobic010G189800 Sobic001G295900 Sobic001G295900 Sobic004G300500--Sobic001G295900 Sobic004G236500 Sobic004G236500 Sobic004G300500--Sobic004G236500 Sobic001G429100 Sobic001G429100 Sobic004G300500--Sobic001G429100 Sobic010G073300 Sobic010G073300 Sobic004G300500--Sobic010G073300 Sobic001G180300 Sobic001G180300 Sobic004G300500--Sobic001G180300 Sobic003G037900--Sobic004G134500 Sobic003G037900--Sobic001G316700 Sobic008G075900 Sobic008G075900 Sobic003G037900--Sobic008G075900 Sobic002G166500 Sobic002G166500 Sobic003G037900--Sobic002G166500 Sobic006G248700 Sobic006G248700 Sobic003G037900--Sobic006G248700 Sobic006G122900 Sobic006G122900 Sobic003G037900--Sobic006G122900 Sobic008G093500 Sobic008G093500 Sobic003G037900--Sobic008G093500 Sobic003G037900--Sobic001G423700 Sobic003G284500 Sobic003G284500 Sobic003G037900--Sobic003G284500 Sobic001G362800--Sobic006G053000 Sobic001G362800--Sobic003G230300 Sobic001G362800--Sobic010G189800 Sobic001G362800--Sobic004G300500 Sobic004G192700 Sobic004G192700 Sobic001G362800--Sobic004G192700 Sobic001G362800--Sobic010G073300 Sobic002G263900 Sobic002G263900 Sobic001G362800--Sobic002G263900 SobicK044200 SobicK044200 Sobic001G362800--SobicK044200 Sobic001G362800--Sobic001G429100 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic009G154000 Sobic009G154000 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic004G242300--Sobic004G300500 Sobic004G242300--Sobic001G429100 Sobic004G242300--Sobic003G230300 Sobic004G320300 Sobic004G320300 Sobic004G242300--Sobic004G320300 Sobic004G242300--Sobic007G013500 Sobic001G396300 Sobic001G396300 Sobic004G242300--Sobic001G396300 Sobic004G242300--Sobic009G154000 Sobic006G195200 Sobic006G195200 Sobic004G242300--Sobic006G195200 Sobic006G162700 Sobic006G162700 Sobic004G242300--Sobic006G162700 Sobic001G316700--Sobic003G037900 Sobic001G316700--Sobic006G248700 Sobic001G316700--Sobic007G050400 Sobic001G316700--Sobic010G269500 Sobic005G012400 Sobic005G012400 Sobic001G316700--Sobic005G012400 Sobic001G316700--Sobic003G284500 Sobic002G422200 Sobic002G422200 Sobic001G316700--Sobic002G422200 Sobic003G176900 Sobic003G176900 Sobic001G316700--Sobic003G176900 Sobic005G076650 Sobic005G076650 Sobic001G316700--Sobic005G076650 Sobic003G365400--Sobic001G429100 Sobic003G365400--Sobic010G189800 Sobic006G139600 Sobic006G139600 Sobic003G365400--Sobic006G139600 Sobic003G365400--Sobic007G013500 Sobic010G018800 Sobic010G018800 Sobic003G365400--Sobic010G018800 Sobic003G365400--Sobic004G300500 Sobic003G365400--Sobic001G362800 Sobic003G365400--Sobic004G192700 Sobic004G275500 Sobic004G275500 Sobic003G365400--Sobic004G275500
Octagon: transcription factors


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