Gene annotation
Transcriptome id Sobic.001G316700.2,Sobic.001G316700.1
Synonym Sb01g030750, LDL3
Functional annotation amine oxidase, putative, expressed
UniProt A0A1Z5S8K2 , C5WUG8
Pfam PF04433 PF13450
Panther DB PTHR10742 PTHR10742:SF284
NCBI CDD KOG0029; Amine oxidase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G16310 : LSD1-like 3
RAP-DB (Rice) LOC_Os10g38850.1 : amine oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a003117
Brachypodium KQJ96912 , KQJ96911
Barley HORVU6Hr1G092910.20 , HORVU6Hr1G092910.21 , HORVU6Hr1G092910.22 , HORVU6Hr1G092910.23 , HORVU6Hr1G092910.3 , HORVU6Hr1G092910.2 , HORVU6Hr1G092910.11 , HORVU6Hr1G092910.10 , HORVU6Hr1G092910.13 , HORVU6Hr1G092910.12 , HORVU6Hr1G092910.15 , HORVU6Hr1G092910.14 , HORVU6Hr1G092910.17 , HORVU6Hr1G092910.16 , HORVU6Hr1G092910.19 , HORVU6Hr1G092910.18 , HORVU6Hr1G092910.5 , HORVU6Hr1G092910.4 , HORVU6Hr1G092910.7 , HORVU6Hr1G092910.6 , HORVU6Hr1G092910.1 , HORVU6Hr1G092910.9 , HORVU6Hr1G092910.8
Wheat TraesCS6B02G449900 , TraesCS6A02G405500 , TraesCS6A02G405500 , TraesCS6D02G389200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
2 Sobic.006G248700 AAA-type ATPase family protein, putative, expressed -
3 Sobic.007G050400 - K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5
4 Sobic.010G269500 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
5 Sobic.005G012400 nucleotidyltransferase, putative, expressed -
6 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
7 Sobic.002G422200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.003G176900 BAH domain containing protein, expressed -
9 Sobic.005G076650 - -
10 Sobic.001G262500 expressed protein -
11 Sobic.008G010100 OsFBX184 - F-box domain containing protein, expressed -
12 Sobic.001G284100 RCD1, putative, expressed -
13 Sobic.002G340350 - -
14 Sobic.004G310700 glutaredoxin 2, putative, expressed -
15 Sobic.010G121500 expressed protein K11267: sister chromatid cohesion protein PDS5
16 Sobic.003G241800 - -
17 Sobic.004G123600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed K18213: proteinaceous RNase P
18 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
19 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
20 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39


Gene co-expression network
sample Sobic001G316700 Sobic001G316700 Sobic003G037900 Sobic003G037900 Sobic001G316700--Sobic003G037900 Sobic006G248700 Sobic006G248700 Sobic001G316700--Sobic006G248700 Sobic007G050400 Sobic007G050400 Sobic001G316700--Sobic007G050400 Sobic010G269500 Sobic010G269500 Sobic001G316700--Sobic010G269500 Sobic005G012400 Sobic005G012400 Sobic001G316700--Sobic005G012400 Sobic003G284500 Sobic003G284500 Sobic001G316700--Sobic003G284500 Sobic002G422200 Sobic002G422200 Sobic001G316700--Sobic002G422200 Sobic003G176900 Sobic003G176900 Sobic001G316700--Sobic003G176900 Sobic005G076650 Sobic005G076650 Sobic001G316700--Sobic005G076650 Sobic004G134500 Sobic004G134500 Sobic003G037900--Sobic004G134500 Sobic003G037900--Sobic001G316700 Sobic008G075900 Sobic008G075900 Sobic003G037900--Sobic008G075900 Sobic002G166500 Sobic002G166500 Sobic003G037900--Sobic002G166500 Sobic003G037900--Sobic006G248700 Sobic006G122900 Sobic006G122900 Sobic003G037900--Sobic006G122900 Sobic008G093500 Sobic008G093500 Sobic003G037900--Sobic008G093500 Sobic001G423700 Sobic001G423700 Sobic003G037900--Sobic001G423700 Sobic003G037900--Sobic003G284500 Sobic004G123600 Sobic004G123600 Sobic006G248700--Sobic004G123600 Sobic001G381900 Sobic001G381900 Sobic006G248700--Sobic001G381900 Sobic006G248700--Sobic001G316700 Sobic003G028800 Sobic003G028800 Sobic006G248700--Sobic003G028800 Sobic006G248700--Sobic008G093500 Sobic003G211500 Sobic003G211500 Sobic006G248700--Sobic003G211500 Sobic006G248700--Sobic003G037900 Sobic004G310700 Sobic004G310700 Sobic006G248700--Sobic004G310700 Sobic007G062100 Sobic007G062100 Sobic006G248700--Sobic007G062100 Sobic001G237700 Sobic001G237700 Sobic007G050400--Sobic001G237700 Sobic007G050400--Sobic010G269500 Sobic002G337300 Sobic002G337300 Sobic007G050400--Sobic002G337300 Sobic007G050400--Sobic001G423700 Sobic007G050400--Sobic003G037900 Sobic007G050400--Sobic004G134500 Sobic004G327400 Sobic004G327400 Sobic007G050400--Sobic004G327400 Sobic007G013500 Sobic007G013500 Sobic007G050400--Sobic007G013500 Sobic009G255300 Sobic009G255300 Sobic007G050400--Sobic009G255300 Sobic010G269500--Sobic007G050400 Sobic003G189800 Sobic003G189800 Sobic010G269500--Sobic003G189800 Sobic004G300500 Sobic004G300500 Sobic010G269500--Sobic004G300500 Sobic010G269500--Sobic003G037900 Sobic001G362800 Sobic001G362800 Sobic010G269500--Sobic001G362800 Sobic006G157300 Sobic006G157300 Sobic010G269500--Sobic006G157300 Sobic004G242300 Sobic004G242300 Sobic010G269500--Sobic004G242300 Sobic010G269500--Sobic001G316700 Sobic003G365400 Sobic003G365400 Sobic010G269500--Sobic003G365400 Sobic006G035300 Sobic006G035300 Sobic005G012400--Sobic006G035300 Sobic001G279100 Sobic001G279100 Sobic005G012400--Sobic001G279100 Sobic009G229800 Sobic009G229800 Sobic005G012400--Sobic009G229800 Sobic005G012400--Sobic003G037900 Sobic001G504200 Sobic001G504200 Sobic005G012400--Sobic001G504200 Sobic002G058500 Sobic002G058500 Sobic005G012400--Sobic002G058500 Sobic001G109800 Sobic001G109800 Sobic005G012400--Sobic001G109800 Sobic004G331100 Sobic004G331100 Sobic005G012400--Sobic004G331100 Sobic007G172400 Sobic007G172400 Sobic005G012400--Sobic007G172400 Sobic003G128500 Sobic003G128500 Sobic003G284500--Sobic003G128500 Sobic007G072400 Sobic007G072400 Sobic003G284500--Sobic007G072400 Sobic004G109500 Sobic004G109500 Sobic003G284500--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic003G284500--Sobic009G088401 Sobic009G050100 Sobic009G050100 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic004G107400 Sobic004G107400 Sobic003G284500--Sobic004G107400 Sobic003G390300 Sobic003G390300 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700 Sobic003G283750 Sobic003G283750 Sobic002G422200--Sobic003G283750 Sobic001G460700 Sobic001G460700 Sobic002G422200--Sobic001G460700 Sobic002G422200--Sobic003G028800 Sobic003G142900 Sobic003G142900 Sobic002G422200--Sobic003G142900 Sobic010G208300 Sobic010G208300 Sobic002G422200--Sobic010G208300 Sobic002G101800 Sobic002G101800 Sobic002G422200--Sobic002G101800 Sobic010G029200 Sobic010G029200 Sobic002G422200--Sobic010G029200 Sobic003G173032 Sobic003G173032 Sobic002G422200--Sobic003G173032 Sobic009G039400 Sobic009G039400 Sobic002G422200--Sobic009G039400 Sobic003G176900--Sobic002G337300 Sobic009G213300 Sobic009G213300 Sobic003G176900--Sobic009G213300 Sobic003G176900--Sobic007G050400 Sobic003G408800 Sobic003G408800 Sobic003G176900--Sobic003G408800 Sobic003G176900--Sobic001G316700 Sobic002G425800 Sobic002G425800 Sobic003G176900--Sobic002G425800 Sobic003G176900--Sobic009G255300 Sobic006G278800 Sobic006G278800 Sobic003G176900--Sobic006G278800 Sobic002G285300 Sobic002G285300 Sobic003G176900--Sobic002G285300 Sobic008G098098 Sobic008G098098 Sobic005G076650--Sobic008G098098 Sobic007G016000 Sobic007G016000 Sobic005G076650--Sobic007G016000 Sobic005G076650--Sobic009G088401 Sobic004G043200 Sobic004G043200 Sobic005G076650--Sobic004G043200 Sobic005G076650--Sobic007G072400 Sobic005G076650--Sobic010G152700 Sobic008G119200 Sobic008G119200 Sobic005G076650--Sobic008G119200 Sobic001G516200 Sobic001G516200 Sobic005G076650--Sobic001G516200 Sobic006G273500 Sobic006G273500 Sobic005G076650--Sobic006G273500
Octagon: transcription factors


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