Gene annotation
Transcriptome id Sobic.006G248700.2
Synonym Sb06g031390
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1Z5RFH2
Pfam PF00004
Panther DB PTHR32429:SF11 PTHR32429
NCBI CDD KOG0651; 26S proteasome regulatory complex, ATPase RPT4
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G73110 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g56320.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a009458
Brachypodium KQJ85053
Barley HORVU0Hr1G005570.11 , HORVU0Hr1G005570.10 , HORVU0Hr1G005570.1 , HORVU0Hr1G005570.3 , HORVU0Hr1G005570.2 , HORVU0Hr1G005570.5 , HORVU0Hr1G005570.4 , HORVU0Hr1G005570.7 , HORVU0Hr1G005570.6 , HORVU0Hr1G005570.9 , HORVU0Hr1G005570.8
Wheat TraesCS2D02G501700 , TraesCS2A02G501200 , TraesCS2A02G501200 , TraesCS2B02G529300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G123600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed K18213: proteinaceous RNase P
2 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
3 Sobic.001G316700 amine oxidase, putative, expressed -
4 Sobic.003G028800 Protein of unknown function (DUF1677)(PubMedID : 26465154)@Protein of unknown function (DUF1677)(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.008G093500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
6 Sobic.003G211500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
8 Sobic.004G310700 glutaredoxin 2, putative, expressed -
9 Sobic.007G062100 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
10 Sobic.005G076650 - -
11 Sobic.009G145900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PB1 domain containing protein, expressed -
12 Sobic.009G125600 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
13 Sobic.008G050100 SAP domain containing protein, expressed -
14 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
15 Sobic.003G259901 - -
16 Sobic.002G422200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G204500 expressed protein -
18 Sobic.006G122900 expressed protein K15360: STRA13, CENPX, centromere protein X
19 Sobic.004G132400 lectin-like receptor kinase, putative, expressed -
20 Sobic.007G124000 programmed cell death protein 2, putative, expressed -


Gene co-expression network
sample Sobic006G248700 Sobic006G248700 Sobic004G123600 Sobic004G123600 Sobic006G248700--Sobic004G123600 Sobic001G381900 Sobic001G381900 Sobic006G248700--Sobic001G381900 Sobic001G316700 Sobic001G316700 Sobic006G248700--Sobic001G316700 Sobic003G028800 Sobic003G028800 Sobic006G248700--Sobic003G028800 Sobic008G093500 Sobic008G093500 Sobic006G248700--Sobic008G093500 Sobic003G211500 Sobic003G211500 Sobic006G248700--Sobic003G211500 Sobic003G037900 Sobic003G037900 Sobic006G248700--Sobic003G037900 Sobic004G310700 Sobic004G310700 Sobic006G248700--Sobic004G310700 Sobic007G062100 Sobic007G062100 Sobic006G248700--Sobic007G062100 Sobic004G123600--Sobic001G381900 Sobic009G157000 Sobic009G157000 Sobic004G123600--Sobic009G157000 Sobic006G111500 Sobic006G111500 Sobic004G123600--Sobic006G111500 Sobic004G123600--Sobic006G248700 Sobic004G123600--Sobic003G211500 Sobic003G132300 Sobic003G132300 Sobic004G123600--Sobic003G132300 Sobic004G123300 Sobic004G123300 Sobic004G123600--Sobic004G123300 Sobic006G122900 Sobic006G122900 Sobic004G123600--Sobic006G122900 Sobic004G132400 Sobic004G132400 Sobic004G123600--Sobic004G132400 Sobic004G204500 Sobic004G204500 Sobic001G381900--Sobic004G204500 Sobic001G381900--Sobic004G123600 Sobic001G381900--Sobic003G211500 Sobic010G268100 Sobic010G268100 Sobic001G381900--Sobic010G268100 Sobic004G119500 Sobic004G119500 Sobic001G381900--Sobic004G119500 Sobic001G381900--Sobic004G123300 Sobic001G381900--Sobic006G248700 Sobic001G381900--Sobic003G132300 Sobic009G237800 Sobic009G237800 Sobic001G381900--Sobic009G237800 Sobic001G316700--Sobic003G037900 Sobic001G316700--Sobic006G248700 Sobic007G050400 Sobic007G050400 Sobic001G316700--Sobic007G050400 Sobic010G269500 Sobic010G269500 Sobic001G316700--Sobic010G269500 Sobic005G012400 Sobic005G012400 Sobic001G316700--Sobic005G012400 Sobic003G284500 Sobic003G284500 Sobic001G316700--Sobic003G284500 Sobic002G422200 Sobic002G422200 Sobic001G316700--Sobic002G422200 Sobic003G176900 Sobic003G176900 Sobic001G316700--Sobic003G176900 Sobic005G076650 Sobic005G076650 Sobic001G316700--Sobic005G076650 Sobic006G123700 Sobic006G123700 Sobic003G028800--Sobic006G123700 Sobic003G028800--Sobic002G422200 Sobic008G050100 Sobic008G050100 Sobic003G028800--Sobic008G050100 Sobic002G101800 Sobic002G101800 Sobic003G028800--Sobic002G101800 Sobic003G173032 Sobic003G173032 Sobic003G028800--Sobic003G173032 Sobic008G023000 Sobic008G023000 Sobic003G028800--Sobic008G023000 Sobic008G002100 Sobic008G002100 Sobic003G028800--Sobic008G002100 Sobic001G527400 Sobic001G527400 Sobic003G028800--Sobic001G527400 Sobic007G183000 Sobic007G183000 Sobic003G028800--Sobic007G183000 Sobic002G166500 Sobic002G166500 Sobic008G093500--Sobic002G166500 Sobic006G256100 Sobic006G256100 Sobic008G093500--Sobic006G256100 Sobic001G446900 Sobic001G446900 Sobic008G093500--Sobic001G446900 Sobic008G124700 Sobic008G124700 Sobic008G093500--Sobic008G124700 Sobic008G093500--Sobic006G248700 Sobic001G133466 Sobic001G133466 Sobic008G093500--Sobic001G133466 Sobic001G274200 Sobic001G274200 Sobic008G093500--Sobic001G274200 Sobic001G420200 Sobic001G420200 Sobic008G093500--Sobic001G420200 Sobic003G241800 Sobic003G241800 Sobic008G093500--Sobic003G241800 Sobic007G132000 Sobic007G132000 Sobic003G211500--Sobic007G132000 Sobic003G211500--Sobic003G132300 Sobic003G211500--Sobic001G381900 Sobic003G211500--Sobic004G132400 Sobic003G211500--Sobic004G204500 Sobic006G229300 Sobic006G229300 Sobic003G211500--Sobic006G229300 Sobic003G211500--Sobic004G119500 Sobic004G023400 Sobic004G023400 Sobic003G211500--Sobic004G023400 Sobic001G147400 Sobic001G147400 Sobic003G211500--Sobic001G147400 Sobic004G134500 Sobic004G134500 Sobic003G037900--Sobic004G134500 Sobic003G037900--Sobic001G316700 Sobic008G075900 Sobic008G075900 Sobic003G037900--Sobic008G075900 Sobic003G037900--Sobic002G166500 Sobic003G037900--Sobic006G248700 Sobic003G037900--Sobic006G122900 Sobic003G037900--Sobic008G093500 Sobic001G423700 Sobic001G423700 Sobic003G037900--Sobic001G423700 Sobic003G037900--Sobic003G284500 Sobic003G397000 Sobic003G397000 Sobic004G310700--Sobic003G397000 Sobic001G516200 Sobic001G516200 Sobic004G310700--Sobic001G516200 Sobic003G191800 Sobic003G191800 Sobic004G310700--Sobic003G191800 Sobic001G460700 Sobic001G460700 Sobic004G310700--Sobic001G460700 Sobic007G072400 Sobic007G072400 Sobic004G310700--Sobic007G072400 Sobic010G152700 Sobic010G152700 Sobic004G310700--Sobic010G152700 Sobic003G142900 Sobic003G142900 Sobic004G310700--Sobic003G142900 Sobic005G102200 Sobic005G102200 Sobic004G310700--Sobic005G102200 Sobic007G139000 Sobic007G139000 Sobic004G310700--Sobic007G139000 Sobic007G062100--Sobic006G248700 Sobic010G255300 Sobic010G255300 Sobic007G062100--Sobic010G255300 Sobic007G062100--Sobic008G093500 Sobic010G004300 Sobic010G004300 Sobic007G062100--Sobic010G004300 Sobic007G062100--Sobic003G028800 Sobic010G249700 Sobic010G249700 Sobic007G062100--Sobic010G249700 Sobic009G015100 Sobic009G015100 Sobic007G062100--Sobic009G015100 Sobic003G313300 Sobic003G313300 Sobic007G062100--Sobic003G313300 Sobic004G085600 Sobic004G085600 Sobic007G062100--Sobic004G085600
Octagon: transcription factors


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