Gene annotation
Transcriptome id Sobic.009G125600.1,Sobic.009G125600.2
Synonym Sb09g019310, CPL4
Functional annotation NLI interacting factor-like phosphatase, putative, expressed
UniProt C5YXI3
Pfam PF00533 PF03031
Panther DB PTHR23081
NCBI CDD KOG0323; TFIIF-interacting CTD phosphatases, including NLI-interacting factor
KEGG Orthology K18999; RNA polymerase II C-terminal domain phosphatase-like 3/4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58003 : C-terminal domain phosphatase-like 4
RAP-DB (Rice) LOC_Os05g32430.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a043567 , Zm00025a033635
Brachypodium KQJ82478 , KQK06491 , KQK06490
Barley HORVU1Hr1G063200.6 , HORVU1Hr1G063200.7 , HORVU1Hr1G063200.4 , HORVU1Hr1G063200.5 , HORVU1Hr1G063200.2 , HORVU1Hr1G063200.3 , HORVU1Hr1G063200.1 , HORVU1Hr1G063200.8 , HORVU1Hr1G063200.9 , HORVU1Hr1G063200.10 , HORVU1Hr1G063200.11 , HORVU2Hr1G072470.4 , HORVU2Hr1G072470.5 , HORVU2Hr1G072470.6 , HORVU2Hr1G072470.7 , HORVU2Hr1G072470.2 , HORVU2Hr1G072470.3 , HORVU1Hr1G063200.18 , HORVU1Hr1G063200.19 , HORVU1Hr1G063200.14 , HORVU1Hr1G063200.15 , HORVU1Hr1G063200.16 , HORVU1Hr1G063200.17 , HORVU1Hr1G063200.12 , HORVU1Hr1G063200.13 , HORVU2Hr1G072470.1 , HORVU1Hr1G063200.21 , HORVU1Hr1G063200.20 , HORVU1Hr1G063200.23 , HORVU1Hr1G063200.22 , HORVU1Hr1G063200.25 , HORVU1Hr1G063200.24 , HORVU1Hr1G063200.27 , HORVU1Hr1G063200.26 , HORVU1Hr1G063200.29 , HORVU1Hr1G063200.28
Wheat TraesCS1A02G244200 , TraesCS1B02G255500 , TraesCS1D02G244100 , TraesCS1D02G244100 , TraesCS2D02G290700 , TraesCS1D02G244000 , TraesCS1D02G244000 , TraesCS1D02G244000 , TraesCS1A02G244100 , TraesCS1A02G244100 , TraesCS2B02G309400 , TraesCS2B02G309400 , TraesCS2B02G309400 , TraesCS2A02G293500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G345000 OsFBX8 - F-box domain containing protein, expressed -
2 Sobic.003G396300 PPR repeat containing protein, expressed -
3 Sobic.005G229500 GRAS family transcription factor domain containing protein, expressed -
4 Sobic.010G061100 DUF292 domain containing protein, expressed -
5 Sobic.006G248700 AAA-type ATPase family protein, putative, expressed -
6 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
7 Sobic.008G075900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
9 Sobic.003G259901 - -
10 Sobic.001G285800 expressed protein -
11 Sobic.004G241700 PPR repeat domain containing protein, putative, expressed -
12 Sobic.002G302700 "flowering, a SET (Suppressor of variegation, Enhancer of Zeste, Trithorax) and MYND (Myeloid-Nervy-DEAF1) (SMYD) domain protein (SMYD proteins act as lysine methyltransferases), Ma2 delayed flowering in long days by selectively enhancing the expression of SbPRR37 (Ma1) and SbCO, epistatic interanciton with Ma4"(PubMedID : 30969968)@zinc finger protein, putative, expressed -
13 Sobic.010G094900 protein kinase, putative, expressed -
14 Sobic.004G123300 oxidoreductase/ transition metal ion binding protein, putative, expressed -
15 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
16 Sobic.006G122900 expressed protein K15360: STRA13, CENPX, centromere protein X
17 Sobic.004G237700 N-rich protein, putative, expressed -
18 Sobic.010G098400 rRNA-processing protein EBP2, putative, expressed K14823: EBP2, rRNA-processing protein EBP2
19 Sobic.007G002300 protein kinase family protein, putative, expressed K17535: serine/threonine-protein kinase TNNI3K
20 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16


Gene co-expression network
sample Sobic009G125600 Sobic009G125600 Sobic001G345000 Sobic001G345000 Sobic009G125600--Sobic001G345000 Sobic003G396300 Sobic003G396300 Sobic009G125600--Sobic003G396300 Sobic005G229500 Sobic005G229500 Sobic009G125600--Sobic005G229500 Sobic010G061100 Sobic010G061100 Sobic009G125600--Sobic010G061100 Sobic006G248700 Sobic006G248700 Sobic009G125600--Sobic006G248700 Sobic003G037900 Sobic003G037900 Sobic009G125600--Sobic003G037900 Sobic008G075900 Sobic008G075900 Sobic009G125600--Sobic008G075900 Sobic003G019000 Sobic003G019000 Sobic009G125600--Sobic003G019000 Sobic003G259901 Sobic003G259901 Sobic009G125600--Sobic003G259901 Sobic001G081200 Sobic001G081200 Sobic001G345000--Sobic001G081200 Sobic001G345000--Sobic009G125600 Sobic001G345000--Sobic003G396300 Sobic003G180200 Sobic003G180200 Sobic001G345000--Sobic003G180200 Sobic010G077400 Sobic010G077400 Sobic001G345000--Sobic010G077400 Sobic006G043300 Sobic006G043300 Sobic001G345000--Sobic006G043300 Sobic010G098400 Sobic010G098400 Sobic001G345000--Sobic010G098400 Sobic001G420400 Sobic001G420400 Sobic001G345000--Sobic001G420400 Sobic003G331300 Sobic003G331300 Sobic001G345000--Sobic003G331300 Sobic008G081150 Sobic008G081150 Sobic003G396300--Sobic008G081150 Sobic006G122900 Sobic006G122900 Sobic003G396300--Sobic006G122900 Sobic004G359200 Sobic004G359200 Sobic003G396300--Sobic004G359200 Sobic003G396300--Sobic010G098400 Sobic004G123300 Sobic004G123300 Sobic003G396300--Sobic004G123300 Sobic003G396300--Sobic001G345000 Sobic001G381900 Sobic001G381900 Sobic003G396300--Sobic001G381900 Sobic003G396300--Sobic009G125600 Sobic003G396300--Sobic003G019000 Sobic004G188600 Sobic004G188600 Sobic005G229500--Sobic004G188600 Sobic002G068900 Sobic002G068900 Sobic005G229500--Sobic002G068900 Sobic005G229500--Sobic008G075900 Sobic006G049300 Sobic006G049300 Sobic005G229500--Sobic006G049300 Sobic001G120300 Sobic001G120300 Sobic005G229500--Sobic001G120300 Sobic005G229500--Sobic009G125600 Sobic003G354400 Sobic003G354400 Sobic005G229500--Sobic003G354400 Sobic002G411300 Sobic002G411300 Sobic005G229500--Sobic002G411300 Sobic004G153501 Sobic004G153501 Sobic005G229500--Sobic004G153501 Sobic006G212600 Sobic006G212600 Sobic010G061100--Sobic006G212600 Sobic010G061100--Sobic009G125600 Sobic004G043200 Sobic004G043200 Sobic010G061100--Sobic004G043200 Sobic001G285800 Sobic001G285800 Sobic010G061100--Sobic001G285800 Sobic002G270100 Sobic002G270100 Sobic010G061100--Sobic002G270100 Sobic010G061100--Sobic004G123300 Sobic002G098701 Sobic002G098701 Sobic010G061100--Sobic002G098701 Sobic001G262500 Sobic001G262500 Sobic010G061100--Sobic001G262500 Sobic003G001550 Sobic003G001550 Sobic010G061100--Sobic003G001550 Sobic004G123600 Sobic004G123600 Sobic006G248700--Sobic004G123600 Sobic006G248700--Sobic001G381900 Sobic001G316700 Sobic001G316700 Sobic006G248700--Sobic001G316700 Sobic003G028800 Sobic003G028800 Sobic006G248700--Sobic003G028800 Sobic008G093500 Sobic008G093500 Sobic006G248700--Sobic008G093500 Sobic003G211500 Sobic003G211500 Sobic006G248700--Sobic003G211500 Sobic006G248700--Sobic003G037900 Sobic004G310700 Sobic004G310700 Sobic006G248700--Sobic004G310700 Sobic007G062100 Sobic007G062100 Sobic006G248700--Sobic007G062100 Sobic004G134500 Sobic004G134500 Sobic003G037900--Sobic004G134500 Sobic003G037900--Sobic001G316700 Sobic003G037900--Sobic008G075900 Sobic002G166500 Sobic002G166500 Sobic003G037900--Sobic002G166500 Sobic003G037900--Sobic006G248700 Sobic003G037900--Sobic006G122900 Sobic003G037900--Sobic008G093500 Sobic001G423700 Sobic001G423700 Sobic003G037900--Sobic001G423700 Sobic003G284500 Sobic003G284500 Sobic003G037900--Sobic003G284500 Sobic002G272800 Sobic002G272800 Sobic008G075900--Sobic002G272800 Sobic008G075900--Sobic002G411300 Sobic008G075900--Sobic002G166500 Sobic004G210101 Sobic004G210101 Sobic008G075900--Sobic004G210101 Sobic008G075900--Sobic003G037900 Sobic002G200100 Sobic002G200100 Sobic008G075900--Sobic002G200100 Sobic001G119300 Sobic001G119300 Sobic008G075900--Sobic001G119300 Sobic008G045450 Sobic008G045450 Sobic008G075900--Sobic008G045450 Sobic008G075900--Sobic005G229500 Sobic001G214800 Sobic001G214800 Sobic003G019000--Sobic001G214800 Sobic003G434700 Sobic003G434700 Sobic003G019000--Sobic003G434700 Sobic009G129100 Sobic009G129100 Sobic003G019000--Sobic009G129100 Sobic001G494500 Sobic001G494500 Sobic003G019000--Sobic001G494500 Sobic003G067100 Sobic003G067100 Sobic003G019000--Sobic003G067100 Sobic007G123600 Sobic007G123600 Sobic003G019000--Sobic007G123600 Sobic001G354600 Sobic001G354600 Sobic003G019000--Sobic001G354600 Sobic001G375300 Sobic001G375300 Sobic003G019000--Sobic001G375300 Sobic001G022500 Sobic001G022500 Sobic003G019000--Sobic001G022500 Sobic006G210100 Sobic006G210100 Sobic003G259901--Sobic006G210100 Sobic003G259901--Sobic002G166500 Sobic005G077466 Sobic005G077466 Sobic003G259901--Sobic005G077466 Sobic006G209850 Sobic006G209850 Sobic003G259901--Sobic006G209850 Sobic002G144933 Sobic002G144933 Sobic003G259901--Sobic002G144933 Sobic009G065100 Sobic009G065100 Sobic003G259901--Sobic009G065100 Sobic006G128900 Sobic006G128900 Sobic003G259901--Sobic006G128900 Sobic001G274200 Sobic001G274200 Sobic003G259901--Sobic001G274200 Sobic006G246900 Sobic006G246900 Sobic003G259901--Sobic006G246900
Octagon: transcription factors


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