Gene annotation
Transcriptome id Sobic.005G229500.1
Synonym Sb05g027750
Functional annotation GRAS family transcription factor domain containing protein, expressed
UniProt A0A1B6PU71
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF41
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37650 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os11g47890.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029061 , Zm00025a029081 , Zm00025a029082
Brachypodium KQK10137
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G188600 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
2 Sobic.002G068900 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
3 Sobic.008G075900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.006G049300 nitrate-induced NOI protein, expressed K13456: RPM1-interacting protein 4
5 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
6 Sobic.009G125600 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
7 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.002G411300 expressed protein -
9 Sobic.004G153501 - -
10 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
11 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
12 Sobic.002G200100 AGAP000554-PA, putative, expressed -
13 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
14 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
15 Sobic.008G144401 - -
16 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
17 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
18 Sobic.001G171500 presenilin, putative, expressed K04505: PSEN1, presenilin 1
19 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
20 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8


Gene co-expression network
sample Sobic005G229500 Sobic005G229500 Sobic004G188600 Sobic004G188600 Sobic005G229500--Sobic004G188600 Sobic002G068900 Sobic002G068900 Sobic005G229500--Sobic002G068900 Sobic008G075900 Sobic008G075900 Sobic005G229500--Sobic008G075900 Sobic006G049300 Sobic006G049300 Sobic005G229500--Sobic006G049300 Sobic001G120300 Sobic001G120300 Sobic005G229500--Sobic001G120300 Sobic009G125600 Sobic009G125600 Sobic005G229500--Sobic009G125600 Sobic003G354400 Sobic003G354400 Sobic005G229500--Sobic003G354400 Sobic002G411300 Sobic002G411300 Sobic005G229500--Sobic002G411300 Sobic004G153501 Sobic004G153501 Sobic005G229500--Sobic004G153501 Sobic004G188600--Sobic005G229500 Sobic004G188600--Sobic002G068900 Sobic004G188600--Sobic003G354400 Sobic009G126900 Sobic009G126900 Sobic004G188600--Sobic009G126900 Sobic004G188600--Sobic006G049300 Sobic009G152700 Sobic009G152700 Sobic004G188600--Sobic009G152700 Sobic003G329400 Sobic003G329400 Sobic004G188600--Sobic003G329400 Sobic003G366400 Sobic003G366400 Sobic004G188600--Sobic003G366400 Sobic008G144401 Sobic008G144401 Sobic004G188600--Sobic008G144401 Sobic001G323000 Sobic001G323000 Sobic002G068900--Sobic001G323000 Sobic002G068900--Sobic004G188600 Sobic002G424000 Sobic002G424000 Sobic002G068900--Sobic002G424000 Sobic007G024700 Sobic007G024700 Sobic002G068900--Sobic007G024700 Sobic002G068900--Sobic005G229500 Sobic003G305200 Sobic003G305200 Sobic002G068900--Sobic003G305200 Sobic001G390800 Sobic001G390800 Sobic002G068900--Sobic001G390800 Sobic009G249200 Sobic009G249200 Sobic002G068900--Sobic009G249200 Sobic010G264200 Sobic010G264200 Sobic002G068900--Sobic010G264200 Sobic002G272800 Sobic002G272800 Sobic008G075900--Sobic002G272800 Sobic008G075900--Sobic002G411300 Sobic002G166500 Sobic002G166500 Sobic008G075900--Sobic002G166500 Sobic004G210101 Sobic004G210101 Sobic008G075900--Sobic004G210101 Sobic003G037900 Sobic003G037900 Sobic008G075900--Sobic003G037900 Sobic002G200100 Sobic002G200100 Sobic008G075900--Sobic002G200100 Sobic001G119300 Sobic001G119300 Sobic008G075900--Sobic001G119300 Sobic008G045450 Sobic008G045450 Sobic008G075900--Sobic008G045450 Sobic008G075900--Sobic005G229500 Sobic006G049300--Sobic003G354400 Sobic010G239700 Sobic010G239700 Sobic006G049300--Sobic010G239700 Sobic004G006200 Sobic004G006200 Sobic006G049300--Sobic004G006200 Sobic007G007000 Sobic007G007000 Sobic006G049300--Sobic007G007000 Sobic004G183600 Sobic004G183600 Sobic006G049300--Sobic004G183600 Sobic004G348300 Sobic004G348300 Sobic006G049300--Sobic004G348300 Sobic003G344900 Sobic003G344900 Sobic006G049300--Sobic003G344900 Sobic009G217100 Sobic009G217100 Sobic006G049300--Sobic009G217100 Sobic004G167400 Sobic004G167400 Sobic006G049300--Sobic004G167400 Sobic001G120300--Sobic003G354400 Sobic001G394600 Sobic001G394600 Sobic001G120300--Sobic001G394600 Sobic004G127700 Sobic004G127700 Sobic001G120300--Sobic004G127700 Sobic010G084000 Sobic010G084000 Sobic001G120300--Sobic010G084000 Sobic001G123000 Sobic001G123000 Sobic001G120300--Sobic001G123000 Sobic010G205800 Sobic010G205800 Sobic001G120300--Sobic010G205800 Sobic001G000200 Sobic001G000200 Sobic001G120300--Sobic001G000200 Sobic001G120300--Sobic004G183600 Sobic002G092300 Sobic002G092300 Sobic001G120300--Sobic002G092300 Sobic001G345000 Sobic001G345000 Sobic009G125600--Sobic001G345000 Sobic003G396300 Sobic003G396300 Sobic009G125600--Sobic003G396300 Sobic009G125600--Sobic005G229500 Sobic010G061100 Sobic010G061100 Sobic009G125600--Sobic010G061100 Sobic006G248700 Sobic006G248700 Sobic009G125600--Sobic006G248700 Sobic009G125600--Sobic003G037900 Sobic009G125600--Sobic008G075900 Sobic003G019000 Sobic003G019000 Sobic009G125600--Sobic003G019000 Sobic003G259901 Sobic003G259901 Sobic009G125600--Sobic003G259901 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic003G354400--Sobic008G144401 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic008G073600 Sobic008G073600 Sobic002G411300--Sobic008G073600 Sobic001G478300 Sobic001G478300 Sobic002G411300--Sobic001G478300 Sobic010G058500 Sobic010G058500 Sobic002G411300--Sobic010G058500 Sobic004G203100 Sobic004G203100 Sobic002G411300--Sobic004G203100 Sobic001G427800 Sobic001G427800 Sobic002G411300--Sobic001G427800 Sobic010G144400 Sobic010G144400 Sobic002G411300--Sobic010G144400 Sobic004G349000 Sobic004G349000 Sobic002G411300--Sobic004G349000 Sobic009G036900 Sobic009G036900 Sobic002G411300--Sobic009G036900 Sobic004G153200 Sobic004G153200 Sobic002G411300--Sobic004G153200 Sobic004G153400 Sobic004G153400 Sobic004G153501--Sobic004G153400 Sobic002G046800 Sobic002G046800 Sobic004G153501--Sobic002G046800 Sobic006G138400 Sobic006G138400 Sobic004G153501--Sobic006G138400 Sobic003G069500 Sobic003G069500 Sobic004G153501--Sobic003G069500 Sobic003G093300 Sobic003G093300 Sobic004G153501--Sobic003G093300 Sobic004G153501--Sobic001G123000 Sobic007G148200 Sobic007G148200 Sobic004G153501--Sobic007G148200 Sobic001G048766 Sobic001G048766 Sobic004G153501--Sobic001G048766 Sobic007G190333 Sobic007G190333 Sobic004G153501--Sobic007G190333
Octagon: transcription factors


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