Gene annotation
Transcriptome id Sobic.006G049300.1
Synonym RIN4
Functional annotation nitrate-induced NOI protein, expressed
UniProt A0A1B6PK98
Pfam PF05627
Panther DB PTHR33159:SF8 PTHR33159
NCBI CDD -
KEGG Orthology K13456; RPM1-interacting protein 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25070 : RPM1 interacting protein 4
RAP-DB (Rice) LOC_Os04g31030.1 : nitrate-induced NOI protein, expressed
MaizeGDB (Corn) Zm00025a055826 , Zm00025a011824
Brachypodium KQJ82214 , KQJ82213
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.010G239700 cysteine-rich RLK (RECEPTOR-like protein kinase) 10(PubMedID : 28640841)@TKL_IRAK_DUF26-lh.6 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
4 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
5 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
6 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
7 Sobic.003G344900 selT-like protein precursor, putative, expressed -
8 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -
9 Sobic.004G167400 expressed protein -
10 Sobic.001G137100 homeodomain protein, putative, expressed -
11 Sobic.010G000900 spotted leaf 11, putative, expressed -
12 Sobic.003G063000 expressed protein -
13 Sobic.008G107500 WRKY96, expressed -
14 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.001G137300 GATA zinc finger domain containing protein, expressed -
18 Sobic.006G176600 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
19 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
20 Sobic.005G044800 hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic006G049300 Sobic006G049300 Sobic003G354400 Sobic003G354400 Sobic006G049300--Sobic003G354400 Sobic010G239700 Sobic010G239700 Sobic006G049300--Sobic010G239700 Sobic004G006200 Sobic004G006200 Sobic006G049300--Sobic004G006200 Sobic007G007000 Sobic007G007000 Sobic006G049300--Sobic007G007000 Sobic004G183600 Sobic004G183600 Sobic006G049300--Sobic004G183600 Sobic004G348300 Sobic004G348300 Sobic006G049300--Sobic004G348300 Sobic003G344900 Sobic003G344900 Sobic006G049300--Sobic003G344900 Sobic009G217100 Sobic009G217100 Sobic006G049300--Sobic009G217100 Sobic004G167400 Sobic004G167400 Sobic006G049300--Sobic004G167400 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900 Sobic010G239700--Sobic006G049300 Sobic010G239700--Sobic007G007000 Sobic010G239700--Sobic004G006200 Sobic010G239700--Sobic003G344900 Sobic010G239700--Sobic009G217100 Sobic001G137300 Sobic001G137300 Sobic010G239700--Sobic001G137300 Sobic001G123000 Sobic001G123000 Sobic010G239700--Sobic001G123000 Sobic002G113100 Sobic002G113100 Sobic010G239700--Sobic002G113100 Sobic010G239700--Sobic004G348300 Sobic002G132000 Sobic002G132000 Sobic004G006200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic004G006200--Sobic004G295800 Sobic007G024700 Sobic007G024700 Sobic004G006200--Sobic007G024700 Sobic007G062600 Sobic007G062600 Sobic004G006200--Sobic007G062600 Sobic004G052900 Sobic004G052900 Sobic004G006200--Sobic004G052900 Sobic004G264400 Sobic004G264400 Sobic004G006200--Sobic004G264400 Sobic002G424000 Sobic002G424000 Sobic004G006200--Sobic002G424000 Sobic001G199100 Sobic001G199100 Sobic004G006200--Sobic001G199100 Sobic003G012200 Sobic003G012200 Sobic004G006200--Sobic003G012200 Sobic007G007000--Sobic009G217100 Sobic007G007000--Sobic001G123000 Sobic007G007000--Sobic001G137300 Sobic002G251700 Sobic002G251700 Sobic007G007000--Sobic002G251700 Sobic009G259400 Sobic009G259400 Sobic007G007000--Sobic009G259400 Sobic010G000900 Sobic010G000900 Sobic007G007000--Sobic010G000900 Sobic002G352600 Sobic002G352600 Sobic007G007000--Sobic002G352600 Sobic001G121200 Sobic001G121200 Sobic007G007000--Sobic001G121200 Sobic005G203800 Sobic005G203800 Sobic007G007000--Sobic005G203800 Sobic001G047400 Sobic001G047400 Sobic004G183600--Sobic001G047400 Sobic001G270400 Sobic001G270400 Sobic004G183600--Sobic001G270400 Sobic001G137100 Sobic001G137100 Sobic004G183600--Sobic001G137100 Sobic002G116900 Sobic002G116900 Sobic004G183600--Sobic002G116900 Sobic002G230100 Sobic002G230100 Sobic004G183600--Sobic002G230100 Sobic004G183600--Sobic003G354400 Sobic004G183600--Sobic001G120300 Sobic004G183600--Sobic007G024700 Sobic001G394600 Sobic001G394600 Sobic004G183600--Sobic001G394600 Sobic004G348300--Sobic003G012200 Sobic004G348300--Sobic003G344900 Sobic004G348300--Sobic001G199100 Sobic004G348300--Sobic002G352600 Sobic006G249700 Sobic006G249700 Sobic004G348300--Sobic006G249700 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic003G344900--Sobic003G012200 Sobic003G344900--Sobic010G000900 Sobic003G344900--Sobic004G348300 Sobic003G344900--Sobic009G259400 Sobic005G044800 Sobic005G044800 Sobic003G344900--Sobic005G044800 Sobic003G344900--Sobic001G123000 Sobic003G344900--Sobic001G047400 Sobic001G181700 Sobic001G181700 Sobic003G344900--Sobic001G181700 Sobic001G051200 Sobic001G051200 Sobic003G344900--Sobic001G051200 Sobic009G217100--Sobic009G259400 Sobic009G217100--Sobic010G000900 Sobic009G217100--Sobic007G007000 Sobic009G217100--Sobic002G352600 Sobic002G226900 Sobic002G226900 Sobic009G217100--Sobic002G226900 Sobic009G217100--Sobic004G006200 Sobic009G217100--Sobic004G348300 Sobic009G217100--Sobic001G137100 Sobic010G251000 Sobic010G251000 Sobic009G217100--Sobic010G251000 Sobic004G167400--Sobic010G000900 Sobic002G166900 Sobic002G166900 Sobic004G167400--Sobic002G166900 Sobic001G329100 Sobic001G329100 Sobic004G167400--Sobic001G329100 Sobic003G257000 Sobic003G257000 Sobic004G167400--Sobic003G257000 Sobic010G253800 Sobic010G253800 Sobic004G167400--Sobic010G253800 Sobic002G352700 Sobic002G352700 Sobic004G167400--Sobic002G352700 Sobic003G117900 Sobic003G117900 Sobic004G167400--Sobic003G117900 Sobic001G057800 Sobic001G057800 Sobic004G167400--Sobic001G057800 Sobic010G229400 Sobic010G229400 Sobic004G167400--Sobic010G229400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.