Gene annotation
Transcriptome id Sobic.004G188600.1,Sobic.004G188600.2
Synonym Sb04g023700, UBP3, ATUBP3
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1Z5RN63 , C5XVN1
Pfam PF13423 PF00443
Panther DB PTHR24006 PTHR24006:SF469
NCBI CDD KOG1870; Ubiquitin C-terminal hydrolase
KEGG Orthology K11842; ubiquitin carboxyl-terminal hydrolase 12/46
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT4G39910 : ubiquitin-specific protease 3
RAP-DB (Rice) LOC_Os04g37950.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020786 , Zm00025a056180 , Zm00025a001038
Brachypodium KQK23193 , KQK00002
Barley HORVU6Hr1G050090.2 , HORVU6Hr1G050090.1 , HORVU4Hr1G078590.7 , HORVU4Hr1G078590.6 , HORVU4Hr1G078590.4 , HORVU4Hr1G078590.2 , HORVU4Hr1G078590.1 , HORVU4Hr1G078590.9 , HORVU4Hr1G078590.8
Wheat TraesCS4A02G406600 , TraesCS6D02G187000 , TraesCS7D02G125700 , TraesCS4B02G306100 , TraesCS4B02G306100 , TraesCS7D02G125700 , TraesCS6A02G203500 , TraesCS4D02G304300 , TraesCS6B02G223900 , TraesCS4B02G306100 , TraesCS2A02G340100
Populus PNT35417 , PNT35416 , PNT27964 , PNT27965


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cDNA sequences
Sobic.004G188600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G229500 GRAS family transcription factor domain containing protein, expressed -
2 Sobic.002G068900 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
3 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
4 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
5 Sobic.006G049300 nitrate-induced NOI protein, expressed K13456: RPM1-interacting protein 4
6 Sobic.009G152700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
7 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
8 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
9 Sobic.008G144401 - -
10 Sobic.003G093300 - -
11 Sobic.004G169700 - -
12 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
13 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
14 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
16 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
17 Sobic.003G045100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane protein, putative, expressed -
18 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
19 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
20 Sobic.001G443900 peptide transporter PTR2, putative, expressed -


Gene co-expression network
sample Sobic004G188600 Sobic004G188600 Sobic005G229500 Sobic005G229500 Sobic004G188600--Sobic005G229500 Sobic002G068900 Sobic002G068900 Sobic004G188600--Sobic002G068900 Sobic003G354400 Sobic003G354400 Sobic004G188600--Sobic003G354400 Sobic009G126900 Sobic009G126900 Sobic004G188600--Sobic009G126900 Sobic006G049300 Sobic006G049300 Sobic004G188600--Sobic006G049300 Sobic009G152700 Sobic009G152700 Sobic004G188600--Sobic009G152700 Sobic003G329400 Sobic003G329400 Sobic004G188600--Sobic003G329400 Sobic003G366400 Sobic003G366400 Sobic004G188600--Sobic003G366400 Sobic008G144401 Sobic008G144401 Sobic004G188600--Sobic008G144401 Sobic005G229500--Sobic004G188600 Sobic005G229500--Sobic002G068900 Sobic008G075900 Sobic008G075900 Sobic005G229500--Sobic008G075900 Sobic005G229500--Sobic006G049300 Sobic001G120300 Sobic001G120300 Sobic005G229500--Sobic001G120300 Sobic009G125600 Sobic009G125600 Sobic005G229500--Sobic009G125600 Sobic005G229500--Sobic003G354400 Sobic002G411300 Sobic002G411300 Sobic005G229500--Sobic002G411300 Sobic004G153501 Sobic004G153501 Sobic005G229500--Sobic004G153501 Sobic001G323000 Sobic001G323000 Sobic002G068900--Sobic001G323000 Sobic002G068900--Sobic004G188600 Sobic002G424000 Sobic002G424000 Sobic002G068900--Sobic002G424000 Sobic007G024700 Sobic007G024700 Sobic002G068900--Sobic007G024700 Sobic002G068900--Sobic005G229500 Sobic003G305200 Sobic003G305200 Sobic002G068900--Sobic003G305200 Sobic001G390800 Sobic001G390800 Sobic002G068900--Sobic001G390800 Sobic009G249200 Sobic009G249200 Sobic002G068900--Sobic009G249200 Sobic010G264200 Sobic010G264200 Sobic002G068900--Sobic010G264200 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic003G354400--Sobic008G144401 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic006G049300--Sobic003G354400 Sobic010G239700 Sobic010G239700 Sobic006G049300--Sobic010G239700 Sobic004G006200 Sobic004G006200 Sobic006G049300--Sobic004G006200 Sobic007G007000 Sobic007G007000 Sobic006G049300--Sobic007G007000 Sobic004G183600 Sobic004G183600 Sobic006G049300--Sobic004G183600 Sobic004G348300 Sobic004G348300 Sobic006G049300--Sobic004G348300 Sobic003G344900 Sobic003G344900 Sobic006G049300--Sobic003G344900 Sobic009G217100 Sobic009G217100 Sobic006G049300--Sobic009G217100 Sobic004G167400 Sobic004G167400 Sobic006G049300--Sobic004G167400 Sobic003G401200 Sobic003G401200 Sobic009G152700--Sobic003G401200 Sobic001G447500 Sobic001G447500 Sobic009G152700--Sobic001G447500 Sobic009G152700--Sobic003G366400 Sobic008G062200 Sobic008G062200 Sobic009G152700--Sobic008G062200 Sobic006G214500 Sobic006G214500 Sobic009G152700--Sobic006G214500 Sobic009G152700--Sobic009G126900 Sobic004G042300 Sobic004G042300 Sobic009G152700--Sobic004G042300 Sobic009G152700--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic009G152700--Sobic002G132000 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G329400--Sobic003G354400 Sobic007G219900 Sobic007G219900 Sobic003G366400--Sobic007G219900 Sobic003G366400--Sobic003G401200 Sobic002G215700 Sobic002G215700 Sobic003G366400--Sobic002G215700 Sobic004G260000 Sobic004G260000 Sobic003G366400--Sobic004G260000 Sobic001G227800 Sobic001G227800 Sobic003G366400--Sobic001G227800 Sobic004G246200 Sobic004G246200 Sobic003G366400--Sobic004G246200 Sobic005G018500 Sobic005G018500 Sobic003G366400--Sobic005G018500 Sobic003G366400--Sobic004G101900 Sobic009G211400 Sobic009G211400 Sobic003G366400--Sobic009G211400 Sobic008G144401--Sobic003G354400 Sobic009G177400 Sobic009G177400 Sobic008G144401--Sobic009G177400 Sobic008G144401--Sobic003G329400 Sobic008G144401--Sobic003G061800 Sobic003G005800 Sobic003G005800 Sobic008G144401--Sobic003G005800 Sobic008G144401--Sobic008G147700 Sobic008G144401--Sobic010G130200 Sobic010G188400 Sobic010G188400 Sobic008G144401--Sobic010G188400 Sobic003G241000 Sobic003G241000 Sobic008G144401--Sobic003G241000
Octagon: transcription factors


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