Gene annotation
Transcriptome id Sobic.008G075900.1,Sobic.008G075900.2
Synonym Sb08g006830
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt A0A1Z5R598 , A0A1Z5R589
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF32
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37930 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os06g20610.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024870
Brachypodium -
Barley HORVU4Hr1G087120.8 , HORVU4Hr1G087120.7 , HORVU4Hr1G087120.2
Wheat TraesCS5A02G531400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
2 Sobic.002G411300 expressed protein -
3 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
4 Sobic.004G210101 - -
5 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
6 Sobic.002G200100 AGAP000554-PA, putative, expressed -
7 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
8 Sobic.008G045450 - -
9 Sobic.005G229500 GRAS family transcription factor domain containing protein, expressed -
10 Sobic.001G235000 appr-1-p processing enzyme family protein, putative, expressed -
11 Sobic.010G121600 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
12 Sobic.008G093500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
13 Sobic.004G015800 zinc carboxypeptidase family protein, putative, expressed -
14 Sobic.007G156200 glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed K00753: glycoprotein 3-alpha-L-fucosyltransferase
15 Sobic.002G068900 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
16 Sobic.004G027100 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
17 Sobic.004G326400 ankyrin repeat-rich protein, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
18 Sobic.003G012500 expressed protein -
19 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
20 Sobic.001G053800 expressed protein -


Gene co-expression network
sample Sobic008G075900 Sobic008G075900 Sobic002G272800 Sobic002G272800 Sobic008G075900--Sobic002G272800 Sobic002G411300 Sobic002G411300 Sobic008G075900--Sobic002G411300 Sobic002G166500 Sobic002G166500 Sobic008G075900--Sobic002G166500 Sobic004G210101 Sobic004G210101 Sobic008G075900--Sobic004G210101 Sobic003G037900 Sobic003G037900 Sobic008G075900--Sobic003G037900 Sobic002G200100 Sobic002G200100 Sobic008G075900--Sobic002G200100 Sobic001G119300 Sobic001G119300 Sobic008G075900--Sobic001G119300 Sobic008G045450 Sobic008G045450 Sobic008G075900--Sobic008G045450 Sobic005G229500 Sobic005G229500 Sobic008G075900--Sobic005G229500 Sobic004G150400 Sobic004G150400 Sobic002G272800--Sobic004G150400 Sobic006G088100 Sobic006G088100 Sobic002G272800--Sobic006G088100 Sobic006G109300 Sobic006G109300 Sobic002G272800--Sobic006G109300 Sobic003G074000 Sobic003G074000 Sobic002G272800--Sobic003G074000 Sobic003G437500 Sobic003G437500 Sobic002G272800--Sobic003G437500 Sobic004G119000 Sobic004G119000 Sobic002G272800--Sobic004G119000 Sobic001G028400 Sobic001G028400 Sobic002G272800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic002G272800--Sobic010G033400 Sobic001G309100 Sobic001G309100 Sobic002G272800--Sobic001G309100 Sobic008G073600 Sobic008G073600 Sobic002G411300--Sobic008G073600 Sobic001G478300 Sobic001G478300 Sobic002G411300--Sobic001G478300 Sobic010G058500 Sobic010G058500 Sobic002G411300--Sobic010G058500 Sobic004G203100 Sobic004G203100 Sobic002G411300--Sobic004G203100 Sobic001G427800 Sobic001G427800 Sobic002G411300--Sobic001G427800 Sobic010G144400 Sobic010G144400 Sobic002G411300--Sobic010G144400 Sobic004G349000 Sobic004G349000 Sobic002G411300--Sobic004G349000 Sobic009G036900 Sobic009G036900 Sobic002G411300--Sobic009G036900 Sobic004G153200 Sobic004G153200 Sobic002G411300--Sobic004G153200 Sobic006G080300 Sobic006G080300 Sobic002G166500--Sobic006G080300 Sobic003G259901 Sobic003G259901 Sobic002G166500--Sobic003G259901 Sobic006G210100 Sobic006G210100 Sobic002G166500--Sobic006G210100 Sobic002G106100 Sobic002G106100 Sobic002G166500--Sobic002G106100 Sobic008G116500 Sobic008G116500 Sobic002G166500--Sobic008G116500 Sobic002G157000 Sobic002G157000 Sobic002G166500--Sobic002G157000 Sobic007G217500 Sobic007G217500 Sobic002G166500--Sobic007G217500 Sobic001G206100 Sobic001G206100 Sobic002G166500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic002G166500--Sobic001G257300 Sobic004G210101--Sobic008G075900 Sobic001G157500 Sobic001G157500 Sobic004G210101--Sobic001G157500 Sobic001G032900 Sobic001G032900 Sobic004G210101--Sobic001G032900 Sobic003G284500 Sobic003G284500 Sobic004G210101--Sobic003G284500 Sobic001G513100 Sobic001G513100 Sobic004G210101--Sobic001G513100 Sobic004G210101--Sobic002G411300 Sobic004G210101--Sobic003G074000 Sobic009G225900 Sobic009G225900 Sobic004G210101--Sobic009G225900 Sobic006G122900 Sobic006G122900 Sobic004G210101--Sobic006G122900 Sobic004G134500 Sobic004G134500 Sobic003G037900--Sobic004G134500 Sobic001G316700 Sobic001G316700 Sobic003G037900--Sobic001G316700 Sobic003G037900--Sobic008G075900 Sobic003G037900--Sobic002G166500 Sobic006G248700 Sobic006G248700 Sobic003G037900--Sobic006G248700 Sobic003G037900--Sobic006G122900 Sobic008G093500 Sobic008G093500 Sobic003G037900--Sobic008G093500 Sobic001G423700 Sobic001G423700 Sobic003G037900--Sobic001G423700 Sobic003G037900--Sobic003G284500 Sobic006G173100 Sobic006G173100 Sobic002G200100--Sobic006G173100 Sobic002G200100--Sobic001G119300 Sobic004G021100 Sobic004G021100 Sobic002G200100--Sobic004G021100 Sobic002G010300 Sobic002G010300 Sobic002G200100--Sobic002G010300 Sobic004G350100 Sobic004G350100 Sobic002G200100--Sobic004G350100 Sobic004G007300 Sobic004G007300 Sobic002G200100--Sobic004G007300 Sobic004G205600 Sobic004G205600 Sobic002G200100--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic002G200100--Sobic007G026300 Sobic007G104800 Sobic007G104800 Sobic002G200100--Sobic007G104800 Sobic001G119300--Sobic007G104800 Sobic007G200600 Sobic007G200600 Sobic001G119300--Sobic007G200600 Sobic001G119300--Sobic007G026300 Sobic002G350300 Sobic002G350300 Sobic001G119300--Sobic002G350300 Sobic001G119300--Sobic006G088100 Sobic009G205200 Sobic009G205200 Sobic001G119300--Sobic009G205200 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic001G371300 Sobic001G371300 Sobic008G045450--Sobic001G371300 Sobic001G204501 Sobic001G204501 Sobic008G045450--Sobic001G204501 Sobic003G273100 Sobic003G273100 Sobic008G045450--Sobic003G273100 Sobic001G247400 Sobic001G247400 Sobic008G045450--Sobic001G247400 Sobic004G274700 Sobic004G274700 Sobic008G045450--Sobic004G274700 Sobic008G045450--Sobic002G272800 Sobic001G295600 Sobic001G295600 Sobic008G045450--Sobic001G295600 Sobic002G291300 Sobic002G291300 Sobic008G045450--Sobic002G291300 Sobic003G296600 Sobic003G296600 Sobic008G045450--Sobic003G296600 Sobic004G188600 Sobic004G188600 Sobic005G229500--Sobic004G188600 Sobic002G068900 Sobic002G068900 Sobic005G229500--Sobic002G068900 Sobic005G229500--Sobic008G075900 Sobic006G049300 Sobic006G049300 Sobic005G229500--Sobic006G049300 Sobic001G120300 Sobic001G120300 Sobic005G229500--Sobic001G120300 Sobic009G125600 Sobic009G125600 Sobic005G229500--Sobic009G125600 Sobic003G354400 Sobic003G354400 Sobic005G229500--Sobic003G354400 Sobic005G229500--Sobic002G411300 Sobic004G153501 Sobic004G153501 Sobic005G229500--Sobic004G153501
Octagon: transcription factors


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