Gene annotation
Transcriptome id Sobic.001G053800.1
Synonym Sb01g004930
Functional annotation expressed protein
UniProt C5WX39
Pfam PF10312 PF09732
Panther DB PTHR21737 PTHR21737:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G03910 : -
RAP-DB (Rice) LOC_Os03g58590.1 : expressed protein
MaizeGDB (Corn) Zm00025a025375 , Zm00025a012882 , Zm00025a008598
Brachypodium KQK12656
Barley HORVU5Hr1G107010.6 , HORVU5Hr1G107010.7 , HORVU5Hr1G107010.4 , HORVU5Hr1G107010.5 , HORVU5Hr1G107010.2 , HORVU5Hr1G107010.3 , HORVU5Hr1G107010.1
Wheat TraesCS5D02G454100 , TraesCS5B02G451300 , TraesCS5B02G451300 , TraesCS5A02G446100 , TraesCS5B02G451800
Populus -


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cDNA sequences
Sobic.001G053800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G028300 bromodomain domain containing protein, expressed -
2 Sobic.002G180000 protein kinase domain containing protein, expressed -
3 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
4 Sobic.002G126500 RNA recognition motif containing protein, expressed -
5 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
6 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
7 Sobic.003G012500 expressed protein -
8 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
9 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
10 Sobic.001G056200 expressed protein -
11 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
12 Sobic.007G009400 bromodomain domain containing protein, expressed -
13 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
14 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
15 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
16 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
17 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
18 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.007G205000 zinc finger family protein, putative, expressed -
20 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8


Gene co-expression network
sample Sobic001G053800 Sobic001G053800 Sobic010G028300 Sobic010G028300 Sobic001G053800--Sobic010G028300 Sobic002G180000 Sobic002G180000 Sobic001G053800--Sobic002G180000 Sobic007G132400 Sobic007G132400 Sobic001G053800--Sobic007G132400 Sobic002G126500 Sobic002G126500 Sobic001G053800--Sobic002G126500 Sobic001G119300 Sobic001G119300 Sobic001G053800--Sobic001G119300 Sobic007G111100 Sobic007G111100 Sobic001G053800--Sobic007G111100 Sobic003G012500 Sobic003G012500 Sobic001G053800--Sobic003G012500 Sobic003G241200 Sobic003G241200 Sobic001G053800--Sobic003G241200 Sobic003G401100 Sobic003G401100 Sobic001G053800--Sobic003G401100 Sobic010G028300--Sobic003G401100 Sobic002G350300 Sobic002G350300 Sobic010G028300--Sobic002G350300 Sobic001G056200 Sobic001G056200 Sobic010G028300--Sobic001G056200 Sobic006G121300 Sobic006G121300 Sobic010G028300--Sobic006G121300 Sobic001G131800 Sobic001G131800 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic008G179700 Sobic008G179700 Sobic010G028300--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic010G028300--Sobic003G081000 Sobic004G013600 Sobic004G013600 Sobic010G028300--Sobic004G013600 Sobic002G180000--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic002G180000--Sobic001G143500 Sobic008G139700 Sobic008G139700 Sobic002G180000--Sobic008G139700 Sobic006G065800 Sobic006G065800 Sobic002G180000--Sobic006G065800 Sobic006G267300 Sobic006G267300 Sobic002G180000--Sobic006G267300 Sobic002G180000--Sobic001G131800 Sobic002G272600 Sobic002G272600 Sobic002G180000--Sobic002G272600 Sobic001G080000 Sobic001G080000 Sobic002G180000--Sobic001G080000 Sobic003G405700 Sobic003G405700 Sobic002G180000--Sobic003G405700 Sobic004G084300 Sobic004G084300 Sobic007G132400--Sobic004G084300 Sobic007G132400--Sobic003G241200 Sobic008G067600 Sobic008G067600 Sobic007G132400--Sobic008G067600 Sobic007G104800 Sobic007G104800 Sobic007G132400--Sobic007G104800 Sobic003G220200 Sobic003G220200 Sobic007G132400--Sobic003G220200 Sobic001G107500 Sobic001G107500 Sobic007G132400--Sobic001G107500 Sobic007G132400--Sobic003G081000 Sobic002G320500 Sobic002G320500 Sobic007G132400--Sobic002G320500 Sobic002G310200 Sobic002G310200 Sobic007G132400--Sobic002G310200 Sobic010G236400 Sobic010G236400 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic002G126500--Sobic008G179700 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic001G119300--Sobic007G104800 Sobic007G200600 Sobic007G200600 Sobic001G119300--Sobic007G200600 Sobic007G026300 Sobic007G026300 Sobic001G119300--Sobic007G026300 Sobic001G119300--Sobic002G350300 Sobic006G088100 Sobic006G088100 Sobic001G119300--Sobic006G088100 Sobic009G205200 Sobic009G205200 Sobic001G119300--Sobic009G205200 Sobic002G200100 Sobic002G200100 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic010G202600 Sobic010G202600 Sobic007G111100--Sobic010G202600 Sobic002G262700 Sobic002G262700 Sobic007G111100--Sobic002G262700 Sobic007G111100--Sobic006G267300 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic004G068500 Sobic004G068500 Sobic007G111100--Sobic004G068500 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic010G026400 Sobic010G026400 Sobic003G012500--Sobic010G026400 Sobic002G157300 Sobic002G157300 Sobic003G012500--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic003G012500--Sobic003G187400 Sobic010G260500 Sobic010G260500 Sobic003G012500--Sobic010G260500 Sobic003G261300 Sobic003G261300 Sobic003G012500--Sobic003G261300 Sobic005G149500 Sobic005G149500 Sobic003G012500--Sobic005G149500 Sobic001G446900 Sobic001G446900 Sobic003G012500--Sobic001G446900 Sobic003G012500--Sobic003G220200 Sobic006G173100 Sobic006G173100 Sobic003G012500--Sobic006G173100 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G401100--Sobic003G241200
Octagon: transcription factors


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