Gene annotation
Transcriptome id Sobic.001G235000.2,Sobic.001G235000.1
Synonym Sb01g020590
Functional annotation appr-1-p processing enzyme family protein, putative, expressed
UniProt C5X0E5
Pfam PF00650 PF01661
Panther DB PTHR11106 PTHR11106:SF65
NCBI CDD KOG2633; Hismacro and SEC14 domain-containing proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69340 : appr-1-p processing enzyme family protein
RAP-DB (Rice) LOC_Os10g30750.1 : appr-1-p processing enzyme family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000685 , Zm00025a006771
Brachypodium KQJ96897 , KQK23624 , KQK23625
Barley HORVU1Hr1G037460.9 , HORVU1Hr1G037460.8 , HORVU1Hr1G037460.3 , HORVU1Hr1G037460.2 , HORVU1Hr1G037460.1 , HORVU1Hr1G037460.7 , HORVU1Hr1G037460.6 , HORVU1Hr1G037460.5 , HORVU1Hr1G037460.4 , HORVU4Hr1G083530.9 , HORVU1Hr1G037460.10 , HORVU4Hr1G083530.3 , HORVU4Hr1G083530.2 , HORVU4Hr1G083530.1 , HORVU4Hr1G083530.7 , HORVU4Hr1G083530.6 , HORVU4Hr1G083530.5 , HORVU4Hr1G083530.4 , HORVU1Hr1G037460.13 , HORVU1Hr1G037460.12 , HORVU1Hr1G037460.11 , HORVU4Hr1G083530.8 , HORVU1Hr1G037460.17 , HORVU1Hr1G037460.16 , HORVU1Hr1G037460.15 , HORVU1Hr1G037460.14 , HORVU4Hr1G083530.11 , HORVU4Hr1G083530.10
Wheat TraesCS1A02G141700 , TraesCS1A02G141700 , TraesCS1B02G158300 , TraesCS4B02G317300 , TraesCS4B02G317300 , TraesCS4A02G416700 , TraesCS1B02G158300 , TraesCS1B02G158300 , TraesCS1D02G140800 , TraesCS1D02G140800 , TraesCS1D02G140800 , TraesCS4D02G313900 , TraesCS4D02G313900 , TraesCS4D02G313900
Populus PNT16858 , PNT16859 , PNT16857 , PNT16863 , PNT16862 , PNT16861 , PNT16860 , PNT16864


JBrowse

Open New Page


cDNA sequences
Sobic.001G235000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G015800 zinc carboxypeptidase family protein, putative, expressed -
2 Sobic.004G345700 TBC domain containing protein, expressed -
3 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
4 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
5 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
6 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
7 Sobic.006G130200 expressed protein -
8 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
9 Sobic.006G128800 expressed protein -
10 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
11 Sobic.004G027100 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
12 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
13 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
14 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
15 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
16 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
17 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
18 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
19 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
20 Sobic.010G264400 CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -


Gene co-expression network
sample Sobic001G235000 Sobic001G235000 Sobic004G015800 Sobic004G015800 Sobic001G235000--Sobic004G015800 Sobic004G345700 Sobic004G345700 Sobic001G235000--Sobic004G345700 Sobic010G174800 Sobic010G174800 Sobic001G235000--Sobic010G174800 Sobic001G514000 Sobic001G514000 Sobic001G235000--Sobic001G514000 Sobic003G073000 Sobic003G073000 Sobic001G235000--Sobic003G073000 Sobic002G157300 Sobic002G157300 Sobic001G235000--Sobic002G157300 Sobic006G130200 Sobic006G130200 Sobic001G235000--Sobic006G130200 Sobic001G408700 Sobic001G408700 Sobic001G235000--Sobic001G408700 Sobic006G128800 Sobic006G128800 Sobic001G235000--Sobic006G128800 Sobic004G015800--Sobic001G235000 Sobic004G015800--Sobic001G408700 Sobic004G007300 Sobic004G007300 Sobic004G015800--Sobic004G007300 Sobic004G015800--Sobic006G128800 Sobic004G015800--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G015800--Sobic006G092800 Sobic004G015800--Sobic001G514000 Sobic004G015800--Sobic010G174800 Sobic006G244300 Sobic006G244300 Sobic004G015800--Sobic006G244300 Sobic002G197100 Sobic002G197100 Sobic004G345700--Sobic002G197100 Sobic004G345700--Sobic001G514000 Sobic004G345700--Sobic004G007300 Sobic004G345700--Sobic001G408700 Sobic005G154500 Sobic005G154500 Sobic004G345700--Sobic005G154500 Sobic001G176200 Sobic001G176200 Sobic004G345700--Sobic001G176200 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic010G245000 Sobic010G245000 Sobic004G345700--Sobic010G245000 Sobic003G248500 Sobic003G248500 Sobic010G174800--Sobic003G248500 Sobic010G174800--Sobic006G128800 Sobic003G185200 Sobic003G185200 Sobic010G174800--Sobic003G185200 Sobic003G359300 Sobic003G359300 Sobic010G174800--Sobic003G359300 Sobic010G174800--Sobic006G130200 Sobic003G336800 Sobic003G336800 Sobic010G174800--Sobic003G336800 Sobic004G263900 Sobic004G263900 Sobic010G174800--Sobic004G263900 Sobic001G390500 Sobic001G390500 Sobic010G174800--Sobic001G390500 Sobic001G028400 Sobic001G028400 Sobic010G174800--Sobic001G028400 Sobic001G514000--Sobic002G157300 Sobic001G514000--Sobic004G345700 Sobic006G173100 Sobic006G173100 Sobic001G514000--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic001G514000--Sobic003G008500 Sobic001G514000--Sobic002G197100 Sobic003G401000 Sobic003G401000 Sobic001G514000--Sobic003G401000 Sobic007G137900 Sobic007G137900 Sobic001G514000--Sobic007G137900 Sobic001G514000--Sobic006G128800 Sobic001G514000--Sobic004G007300 Sobic001G206100 Sobic001G206100 Sobic003G073000--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic003G073000--Sobic004G257400 Sobic004G041500 Sobic004G041500 Sobic003G073000--Sobic004G041500 Sobic007G185900 Sobic007G185900 Sobic003G073000--Sobic007G185900 Sobic006G186400 Sobic006G186400 Sobic003G073000--Sobic006G186400 Sobic004G349900 Sobic004G349900 Sobic003G073000--Sobic004G349900 Sobic003G073000--Sobic001G408700 Sobic001G517500 Sobic001G517500 Sobic003G073000--Sobic001G517500 Sobic001G251700 Sobic001G251700 Sobic003G073000--Sobic001G251700 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic006G130200--Sobic006G128800 Sobic004G218300 Sobic004G218300 Sobic006G130200--Sobic004G218300 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic003G398400 Sobic003G398400 Sobic006G130200--Sobic003G398400 Sobic001G425000 Sobic001G425000 Sobic006G130200--Sobic001G425000 Sobic006G130200--Sobic006G092800 Sobic006G130200--Sobic003G336800 Sobic006G130200--Sobic001G235000 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G056200 Sobic001G056200 Sobic001G408700--Sobic001G056200 Sobic007G118200 Sobic007G118200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic001G408700--Sobic002G197100 Sobic004G283000 Sobic004G283000 Sobic001G408700--Sobic004G283000 Sobic001G408700--Sobic010G245000 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic003G261300 Sobic003G261300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic006G128800--Sobic003G008500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.