Gene annotation
Transcriptome id Sobic.010G264400.1
Synonym CRK3, Sb10g030040, ATCRK3
Functional annotation CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A0A194YLP3
Pfam PF06293
Panther DB PTHR24349 PTHR24349:SF103
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology -
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor GO:0016020membrane GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G46700 : CDPK-related kinase 3
RAP-DB (Rice) LOC_Os06g50030.1 : CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a041730 , Zm00025a052316 , Zm00025a018475 , Zm00025a002611
Brachypodium KQK17529 , KQK21093
Barley HORVU5Hr1G006790.1 , HORVU7Hr1G091360.8 , HORVU7Hr1G091360.9 , HORVU7Hr1G091360.2 , HORVU7Hr1G091360.4 , HORVU7Hr1G091360.5 , HORVU7Hr1G091360.1 , HORVU7Hr1G091360.10 , HORVU7Hr1G091360.3 , HORVU7Hr1G091360.6 , HORVU7Hr1G091360.7
Wheat TraesCS7D02G380900 , TraesCS7B02G287100 , TraesCS2B02G171600 , TraesCS4A02G458300 , TraesCS2B02G191800 , TraesCS7A02G384500
Populus PNT27333 , PNT27332 , PNT27331 , PNT50249 , PNT50248 , PNT50247


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cDNA sequences
Sobic.010G264400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
2 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
3 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
4 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
6 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
7 Sobic.006G128800 expressed protein -
8 Sobic.004G007300 expressed protein -
9 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
10 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
11 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
12 Sobic.001G235000 appr-1-p processing enzyme family protein, putative, expressed -
13 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
14 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
15 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
16 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
17 Sobic.004G345700 TBC domain containing protein, expressed -
18 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
19 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -


Gene co-expression network
sample Sobic010G264400 Sobic010G264400 Sobic009G032300 Sobic009G032300 Sobic010G264400--Sobic009G032300 Sobic010G145900 Sobic010G145900 Sobic010G264400--Sobic010G145900 Sobic004G283000 Sobic004G283000 Sobic010G264400--Sobic004G283000 Sobic003G248500 Sobic003G248500 Sobic010G264400--Sobic003G248500 Sobic002G197100 Sobic002G197100 Sobic010G264400--Sobic002G197100 Sobic001G514000 Sobic001G514000 Sobic010G264400--Sobic001G514000 Sobic006G128800 Sobic006G128800 Sobic010G264400--Sobic006G128800 Sobic004G007300 Sobic004G007300 Sobic010G264400--Sobic004G007300 Sobic002G157300 Sobic002G157300 Sobic010G264400--Sobic002G157300 Sobic009G032300--Sobic010G264400 Sobic006G130200 Sobic006G130200 Sobic009G032300--Sobic006G130200 Sobic006G092800 Sobic006G092800 Sobic009G032300--Sobic006G092800 Sobic010G174800 Sobic010G174800 Sobic009G032300--Sobic010G174800 Sobic009G032300--Sobic006G128800 Sobic009G032300--Sobic002G197100 Sobic007G115900 Sobic007G115900 Sobic009G032300--Sobic007G115900 Sobic001G221100 Sobic001G221100 Sobic009G032300--Sobic001G221100 Sobic007G191100 Sobic007G191100 Sobic009G032300--Sobic007G191100 Sobic010G145900--Sobic010G264400 Sobic003G305400 Sobic003G305400 Sobic010G145900--Sobic003G305400 Sobic006G209500 Sobic006G209500 Sobic010G145900--Sobic006G209500 Sobic004G263900 Sobic004G263900 Sobic010G145900--Sobic004G263900 Sobic001G372000 Sobic001G372000 Sobic010G145900--Sobic001G372000 Sobic003G185200 Sobic003G185200 Sobic010G145900--Sobic003G185200 Sobic001G478300 Sobic001G478300 Sobic010G145900--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic010G145900--Sobic010G260500 Sobic004G350100 Sobic004G350100 Sobic010G145900--Sobic004G350100 Sobic004G283000--Sobic003G248500 Sobic002G388200 Sobic002G388200 Sobic004G283000--Sobic002G388200 Sobic004G283000--Sobic004G007300 Sobic004G283000--Sobic004G350100 Sobic008G174300 Sobic008G174300 Sobic004G283000--Sobic008G174300 Sobic007G118200 Sobic007G118200 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic006G173100 Sobic006G173100 Sobic004G283000--Sobic006G173100 Sobic004G283000--Sobic002G157300 Sobic003G359300 Sobic003G359300 Sobic003G248500--Sobic003G359300 Sobic003G248500--Sobic004G283000 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic003G248500--Sobic006G128800 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic002G197100--Sobic003G248500 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic001G514000--Sobic002G157300 Sobic001G514000--Sobic004G345700 Sobic001G514000--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic001G514000--Sobic003G008500 Sobic001G514000--Sobic002G197100 Sobic003G401000 Sobic003G401000 Sobic001G514000--Sobic003G401000 Sobic007G137900 Sobic007G137900 Sobic001G514000--Sobic007G137900 Sobic001G514000--Sobic006G128800 Sobic001G514000--Sobic004G007300 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic004G349900 Sobic004G349900 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic003G261300 Sobic003G261300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic006G128800--Sobic003G008500 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100
Octagon: transcription factors


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