Gene annotation
Transcriptome id Sobic.004G027100.1
Synonym ATARFB1B, ARFB1B, Sb04g002400
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5XTS1
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF200
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07977; Arf/Sar family, other
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G17060 : ADP-ribosylation factor B1B
RAP-DB (Rice) LOC_Os02g03610.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a021658 , Zm00025a018831 , Zm00025a032411
Brachypodium KQJ93099 , KQJ93103 , KQJ93102 , KQJ93101 , KQJ93100
Barley HORVU6Hr1G016100.1 , HORVU6Hr1G076960.1 , HORVU6Hr1G016100.2
Wheat TraesCS6B02G114900 , TraesCS6A02G086900 , TraesCSU02G019600 , TraesCS6A02G086900
Populus -


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cDNA sequences
Sobic.004G027100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
2 Sobic.004G088400 GTPase-activating protein, putative, expressed -
3 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
4 Sobic.001G235000 appr-1-p processing enzyme family protein, putative, expressed -
5 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
6 Sobic.002G177400 expressed protein -
7 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
8 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
9 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
10 Sobic.003G336800 expressed protein -
11 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
12 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
13 Sobic.004G196700 expressed protein -
14 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
15 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
16 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
17 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
18 Sobic.004G048000 DUF292 domain containing protein, expressed -
19 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
20 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B


Gene co-expression network
sample Sobic004G027100 Sobic004G027100 Sobic004G061900 Sobic004G061900 Sobic004G027100--Sobic004G061900 Sobic004G088400 Sobic004G088400 Sobic004G027100--Sobic004G088400 Sobic010G260500 Sobic010G260500 Sobic004G027100--Sobic010G260500 Sobic001G235000 Sobic001G235000 Sobic004G027100--Sobic001G235000 Sobic002G157300 Sobic002G157300 Sobic004G027100--Sobic002G157300 Sobic002G177400 Sobic002G177400 Sobic004G027100--Sobic002G177400 Sobic007G008800 Sobic007G008800 Sobic004G027100--Sobic007G008800 Sobic009G040700 Sobic009G040700 Sobic004G027100--Sobic009G040700 Sobic008G117200 Sobic008G117200 Sobic004G027100--Sobic008G117200 Sobic007G191100 Sobic007G191100 Sobic004G061900--Sobic007G191100 Sobic008G129700 Sobic008G129700 Sobic004G061900--Sobic008G129700 Sobic006G129700 Sobic006G129700 Sobic004G061900--Sobic006G129700 Sobic004G061900--Sobic008G117200 Sobic009G030300 Sobic009G030300 Sobic004G061900--Sobic009G030300 Sobic004G345700 Sobic004G345700 Sobic004G061900--Sobic004G345700 Sobic004G061900--Sobic002G177400 Sobic001G094000 Sobic001G094000 Sobic004G061900--Sobic001G094000 Sobic004G061900--Sobic004G027100 Sobic004G088400--Sobic002G177400 Sobic004G088400--Sobic007G008800 Sobic003G336800 Sobic003G336800 Sobic004G088400--Sobic003G336800 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic003G346000 Sobic003G346000 Sobic004G088400--Sobic003G346000 Sobic004G088400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic004G088400--Sobic007G116400 Sobic004G088400--Sobic009G030300 Sobic010G260500--Sobic002G157300 Sobic008G174300 Sobic008G174300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G033400 Sobic010G033400 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic004G263900 Sobic004G263900 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400 Sobic004G015800 Sobic004G015800 Sobic001G235000--Sobic004G015800 Sobic001G235000--Sobic004G345700 Sobic010G174800 Sobic010G174800 Sobic001G235000--Sobic010G174800 Sobic001G514000 Sobic001G514000 Sobic001G235000--Sobic001G514000 Sobic003G073000 Sobic003G073000 Sobic001G235000--Sobic003G073000 Sobic001G235000--Sobic002G157300 Sobic006G130200 Sobic006G130200 Sobic001G235000--Sobic006G130200 Sobic001G408700 Sobic001G408700 Sobic001G235000--Sobic001G408700 Sobic006G128800 Sobic006G128800 Sobic001G235000--Sobic006G128800 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic002G157300--Sobic001G094000 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic002G177400--Sobic004G088400 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic002G177400--Sobic007G116400 Sobic002G177400--Sobic003G346000 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic007G008800--Sobic003G026300 Sobic007G008800--Sobic004G088400 SobicK009900 SobicK009900 Sobic007G008800--SobicK009900 Sobic007G008800--Sobic002G177400 Sobic004G076732 Sobic004G076732 Sobic007G008800--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic007G008800--Sobic002G410200 Sobic001G024200 Sobic001G024200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic004G196700 Sobic004G196700 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic008G117200--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic008G117200--Sobic008G034600 Sobic008G117200--Sobic001G094000 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic002G421700 Sobic002G421700 Sobic008G117200--Sobic002G421700 Sobic008G117200--Sobic007G116400 Sobic008G117200--Sobic007G011400 Sobic008G117200--Sobic001G477800
Octagon: transcription factors


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