Gene annotation
Transcriptome id Sobic.004G048000.1
Synonym Sb04g004110
Functional annotation DUF292 domain containing protein, expressed
UniProt C5XVD7
Pfam PF03398
Panther DB PTHR12161 PTHR12161:SF24
NCBI CDD KOG2027; Spindle pole body protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32350 : Regulator of Vps4 activity in the MVB pathway protein
RAP-DB (Rice) LOC_Os02g06430.1 : DUF292 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034856 , Zm00025a018192
Brachypodium KQJ93421 , KQJ93422 , KQJ93423
Barley HORVU6Hr1G025460.3 , HORVU6Hr1G025460.2 , HORVU6Hr1G025460.1 , HORVU6Hr1G025460.5 , HORVU6Hr1G025460.4
Wheat TraesCS6B02G161300 , TraesCS6D02G122600 , TraesCS6A02G133000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G177400 expressed protein -
2 Sobic.004G088400 GTPase-activating protein, putative, expressed -
3 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
4 Sobic.006G028200 glycine-rich protein, putative, expressed -
5 Sobic.004G027100 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
6 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
7 Sobic.003G336800 expressed protein -
8 Sobic.004G012000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
9 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
10 Sobic.001G296500 ARABIDILLO-1, putative, expressed -
11 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
12 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
13 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
14 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
15 Sobic.008G020200 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed K07441: beta-1,4-N-acetylglucosaminyltransferase
16 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
17 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
18 Sobic.001G094000 expressed protein -
19 Sobic.005G207100 dnaJ domain containing protein, expressed -
20 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter


Gene co-expression network
sample Sobic004G048000 Sobic004G048000 Sobic002G177400 Sobic002G177400 Sobic004G048000--Sobic002G177400 Sobic004G088400 Sobic004G088400 Sobic004G048000--Sobic004G088400 Sobic009G030300 Sobic009G030300 Sobic004G048000--Sobic009G030300 Sobic006G028200 Sobic006G028200 Sobic004G048000--Sobic006G028200 Sobic004G027100 Sobic004G027100 Sobic004G048000--Sobic004G027100 Sobic008G117200 Sobic008G117200 Sobic004G048000--Sobic008G117200 Sobic003G336800 Sobic003G336800 Sobic004G048000--Sobic003G336800 Sobic004G012000 Sobic004G012000 Sobic004G048000--Sobic004G012000 Sobic004G061900 Sobic004G061900 Sobic004G048000--Sobic004G061900 Sobic002G177400--Sobic004G088400 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic007G008800 Sobic007G008800 Sobic002G177400--Sobic007G008800 Sobic008G129700 Sobic008G129700 Sobic002G177400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G177400--Sobic007G116400 Sobic003G346000 Sobic003G346000 Sobic002G177400--Sobic003G346000 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic004G088400--Sobic002G177400 Sobic004G088400--Sobic007G008800 Sobic004G088400--Sobic003G336800 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic004G088400--Sobic003G346000 Sobic004G088400--Sobic008G129700 Sobic004G088400--Sobic007G116400 Sobic004G088400--Sobic009G030300 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic009G030300--Sobic004G088400 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic009G030300--Sobic008G129700 Sobic003G401000 Sobic003G401000 Sobic006G028200--Sobic003G401000 Sobic001G094000 Sobic001G094000 Sobic006G028200--Sobic001G094000 Sobic009G040700 Sobic009G040700 Sobic006G028200--Sobic009G040700 Sobic010G189000 Sobic010G189000 Sobic006G028200--Sobic010G189000 Sobic003G187400 Sobic003G187400 Sobic006G028200--Sobic003G187400 Sobic006G046700 Sobic006G046700 Sobic006G028200--Sobic006G046700 Sobic001G296500 Sobic001G296500 Sobic006G028200--Sobic001G296500 Sobic003G036900 Sobic003G036900 Sobic006G028200--Sobic003G036900 Sobic001G477800 Sobic001G477800 Sobic006G028200--Sobic001G477800 Sobic004G027100--Sobic004G061900 Sobic004G027100--Sobic004G088400 Sobic010G260500 Sobic010G260500 Sobic004G027100--Sobic010G260500 Sobic001G235000 Sobic001G235000 Sobic004G027100--Sobic001G235000 Sobic002G157300 Sobic002G157300 Sobic004G027100--Sobic002G157300 Sobic004G027100--Sobic002G177400 Sobic004G027100--Sobic007G008800 Sobic004G027100--Sobic009G040700 Sobic004G027100--Sobic008G117200 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic008G117200--Sobic008G034600 Sobic008G117200--Sobic001G094000 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic002G421700 Sobic002G421700 Sobic008G117200--Sobic002G421700 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic008G117200--Sobic001G477800 Sobic003G336800--Sobic004G088400 Sobic003G336800--Sobic008G129700 Sobic002G061400 Sobic002G061400 Sobic003G336800--Sobic002G061400 Sobic010G174800 Sobic010G174800 Sobic003G336800--Sobic010G174800 Sobic003G336800--Sobic001G296500 Sobic010G202600 Sobic010G202600 Sobic003G336800--Sobic010G202600 Sobic010G199800 Sobic010G199800 Sobic003G336800--Sobic010G199800 Sobic006G128800 Sobic006G128800 Sobic003G336800--Sobic006G128800 Sobic003G336800--Sobic007G008800 Sobic005G154700 Sobic005G154700 Sobic004G012000--Sobic005G154700 Sobic004G012000--Sobic004G088400 Sobic004G012000--Sobic001G296500 Sobic004G012000--Sobic008G117200 Sobic004G012000--Sobic003G336800 Sobic003G239900 Sobic003G239900 Sobic004G012000--Sobic003G239900 Sobic004G026100 Sobic004G026100 Sobic004G012000--Sobic004G026100 Sobic002G197100 Sobic002G197100 Sobic004G012000--Sobic002G197100 Sobic007G095200 Sobic007G095200 Sobic004G012000--Sobic007G095200 Sobic007G191100 Sobic007G191100 Sobic004G061900--Sobic007G191100 Sobic004G061900--Sobic008G129700 Sobic006G129700 Sobic006G129700 Sobic004G061900--Sobic006G129700 Sobic004G061900--Sobic008G117200 Sobic004G061900--Sobic009G030300 Sobic004G345700 Sobic004G345700 Sobic004G061900--Sobic004G345700 Sobic004G061900--Sobic002G177400 Sobic004G061900--Sobic001G094000 Sobic004G061900--Sobic004G027100
Octagon: transcription factors


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