Gene annotation
Transcriptome id Sobic.008G045450.1
Synonym -
Functional annotation -
UniProt A0A1Z5R4S3
Pfam PF13456 PF08268 PF00646
Panther DB PTHR32133 PTHR32133:SF143
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G09510 : Ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os07g13890.1 : OsFBX230 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053973
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
2 Sobic.001G204501 - -
3 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
4 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
5 Sobic.004G274700 SNARE associated Golgi protein, putative, expressed -
6 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
7 Sobic.001G295600 myb-like transcription factor family protein(PubMedID : 26465154)@MYB family transcription factor, putative, expressed -
8 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
9 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
10 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
11 Sobic.002G411300 expressed protein -
12 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
13 Sobic.010G209501 - -
14 Sobic.008G106800 isoflavone reductase, putative, expressed -
15 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
16 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
17 Sobic.008G075900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.003G137400 OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
19 Sobic.007G028700 LSD1 zinc finger domain containing protein, expressed -
20 Sobic.007G035600 MSP domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G045450 Sobic008G045450 Sobic001G371300 Sobic001G371300 Sobic008G045450--Sobic001G371300 Sobic001G204501 Sobic001G204501 Sobic008G045450--Sobic001G204501 Sobic003G273100 Sobic003G273100 Sobic008G045450--Sobic003G273100 Sobic001G247400 Sobic001G247400 Sobic008G045450--Sobic001G247400 Sobic004G274700 Sobic004G274700 Sobic008G045450--Sobic004G274700 Sobic002G272800 Sobic002G272800 Sobic008G045450--Sobic002G272800 Sobic001G295600 Sobic001G295600 Sobic008G045450--Sobic001G295600 Sobic002G291300 Sobic002G291300 Sobic008G045450--Sobic002G291300 Sobic003G296600 Sobic003G296600 Sobic008G045450--Sobic003G296600 Sobic001G371300--Sobic003G273100 Sobic001G371300--Sobic002G291300 Sobic001G478300 Sobic001G478300 Sobic001G371300--Sobic001G478300 Sobic001G371300--Sobic004G274700 Sobic001G427800 Sobic001G427800 Sobic001G371300--Sobic001G427800 Sobic004G079100 Sobic004G079100 Sobic001G371300--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic001G371300--Sobic010G083700 Sobic001G056700 Sobic001G056700 Sobic001G371300--Sobic001G056700 Sobic001G149700 Sobic001G149700 Sobic001G371300--Sobic001G149700 Sobic001G204501--Sobic008G045450 Sobic001G204501--Sobic002G291300 Sobic004G179600 Sobic004G179600 Sobic001G204501--Sobic004G179600 Sobic001G204501--Sobic001G295600 Sobic001G204501--Sobic001G371300 Sobic004G035200 Sobic004G035200 Sobic001G204501--Sobic004G035200 Sobic006G256500 Sobic006G256500 Sobic001G204501--Sobic006G256500 Sobic004G293700 Sobic004G293700 Sobic001G204501--Sobic004G293700 Sobic002G411300 Sobic002G411300 Sobic001G204501--Sobic002G411300 Sobic003G273100--Sobic001G371300 Sobic003G273100--Sobic001G149700 Sobic003G273100--Sobic001G478300 Sobic003G273100--Sobic004G274700 Sobic003G273100--Sobic002G291300 Sobic003G273100--Sobic001G427800 Sobic004G231400 Sobic004G231400 Sobic003G273100--Sobic004G231400 Sobic007G126200 Sobic007G126200 Sobic003G273100--Sobic007G126200 Sobic003G273100--Sobic004G079100 Sobic001G247400--Sobic003G296600 Sobic001G032100 Sobic001G032100 Sobic001G247400--Sobic001G032100 Sobic001G225100 Sobic001G225100 Sobic001G247400--Sobic001G225100 Sobic003G034500 Sobic003G034500 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic003G293900 Sobic003G293900 Sobic001G247400--Sobic003G293900 Sobic004G164500 Sobic004G164500 Sobic001G247400--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic001G247400--Sobic001G311000 Sobic002G246600 Sobic002G246600 Sobic001G247400--Sobic002G246600 Sobic004G274700--Sobic001G478300 Sobic004G274700--Sobic004G231400 Sobic004G274700--Sobic001G371300 Sobic004G274700--Sobic003G273100 Sobic004G274700--Sobic001G149700 Sobic006G209500 Sobic006G209500 Sobic004G274700--Sobic006G209500 Sobic010G071200 Sobic010G071200 Sobic004G274700--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic004G274700--Sobic006G257900 Sobic003G137400 Sobic003G137400 Sobic004G274700--Sobic003G137400 Sobic004G150400 Sobic004G150400 Sobic002G272800--Sobic004G150400 Sobic006G088100 Sobic006G088100 Sobic002G272800--Sobic006G088100 Sobic006G109300 Sobic006G109300 Sobic002G272800--Sobic006G109300 Sobic003G074000 Sobic003G074000 Sobic002G272800--Sobic003G074000 Sobic003G437500 Sobic003G437500 Sobic002G272800--Sobic003G437500 Sobic004G119000 Sobic004G119000 Sobic002G272800--Sobic004G119000 Sobic001G028400 Sobic001G028400 Sobic002G272800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic002G272800--Sobic010G033400 Sobic001G309100 Sobic001G309100 Sobic002G272800--Sobic001G309100 Sobic001G295600--Sobic008G045450 Sobic001G295600--Sobic001G247400 Sobic010G092100 Sobic010G092100 Sobic001G295600--Sobic010G092100 Sobic001G295600--Sobic003G296600 Sobic001G295600--Sobic002G246600 Sobic001G295600--Sobic001G204501 Sobic002G376700 Sobic002G376700 Sobic001G295600--Sobic002G376700 Sobic007G028700 Sobic007G028700 Sobic001G295600--Sobic007G028700 Sobic001G038500 Sobic001G038500 Sobic001G295600--Sobic001G038500 Sobic002G291300--Sobic001G371300 Sobic002G291300--Sobic001G056700 Sobic002G291300--Sobic003G273100 Sobic002G291300--Sobic001G427800 Sobic001G230700 Sobic001G230700 Sobic002G291300--Sobic001G230700 Sobic001G471900 Sobic001G471900 Sobic002G291300--Sobic001G471900 Sobic007G126100 Sobic007G126100 Sobic002G291300--Sobic007G126100 Sobic002G291300--Sobic001G478300 Sobic002G291300--Sobic004G164500 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic003G296600--Sobic001G225100 Sobic006G194150 Sobic006G194150 Sobic003G296600--Sobic006G194150 Sobic003G296600--Sobic002G246600 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300
Octagon: transcription factors


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