Gene annotation
Transcriptome id Sobic.007G028700.1,Sobic.007G028700.3,Sobic.007G028700.2
Synonym Sb07g002500, LSD1
Functional annotation LSD1 zinc finger domain containing protein, expressed
UniProt C5YMW9 , A0A1Z5R7R9 , A0A1B6PF99
Pfam PF06943
Panther DB PTHR31747 PTHR31747:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20380 : LSD1 zinc finger family protein
RAP-DB (Rice) LOC_Os08g03610.1 : LSD1 zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040389
Brachypodium KQJ94949
Barley HORVU7Hr1G074030.3 , HORVU7Hr1G074030.2
Wheat TraesCS7A02G310500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G241350 - -
2 Sobic.001G465100 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.002G367700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
4 Sobic.004G325900 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
5 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
6 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
7 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
8 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
9 Sobic.001G078900 MYB(PubMedID : 28944535)@MYB family transcription factor, putative, expressed -
10 Sobic.004G279700 expressed protein -
11 Sobic.003G320600 membrane protein, putative, expressed -
12 Sobic.008G045450 - -
13 Sobic.006G051100 expressed protein -
14 Sobic.002G246600 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
16 Sobic.002G376700 EF hand family protein, putative -
17 Sobic.010G209501 - -
18 Sobic.003G357600 laccase precursor protein, putative, expressed K05909: laccase
19 Sobic.006G180432 - -
20 Sobic.006G241600 expressed protein -


Gene co-expression network
sample Sobic007G028700 Sobic007G028700 Sobic006G241350 Sobic006G241350 Sobic007G028700--Sobic006G241350 Sobic001G465100 Sobic001G465100 Sobic007G028700--Sobic001G465100 Sobic002G367700 Sobic002G367700 Sobic007G028700--Sobic002G367700 Sobic004G325900 Sobic004G325900 Sobic007G028700--Sobic004G325900 Sobic001G032100 Sobic001G032100 Sobic007G028700--Sobic001G032100 Sobic004G221900 Sobic004G221900 Sobic007G028700--Sobic004G221900 Sobic001G247400 Sobic001G247400 Sobic007G028700--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic007G028700--Sobic003G296600 Sobic001G078900 Sobic001G078900 Sobic007G028700--Sobic001G078900 Sobic006G241400 Sobic006G241400 Sobic006G241350--Sobic006G241400 Sobic004G279700 Sobic004G279700 Sobic006G241350--Sobic004G279700 Sobic006G241350--Sobic004G325900 Sobic006G241600 Sobic006G241600 Sobic006G241350--Sobic006G241600 Sobic006G241350--Sobic007G028700 Sobic006G241350--Sobic002G367700 Sobic006G241350--Sobic001G078900 Sobic003G123300 Sobic003G123300 Sobic006G241350--Sobic003G123300 Sobic006G241350--Sobic001G465100 Sobic008G042500 Sobic008G042500 Sobic001G465100--Sobic008G042500 Sobic003G391100 Sobic003G391100 Sobic001G465100--Sobic003G391100 Sobic001G465100--Sobic003G123300 Sobic001G465100--Sobic001G078900 Sobic001G465100--Sobic004G325900 Sobic002G376700 Sobic002G376700 Sobic001G465100--Sobic002G376700 Sobic001G465100--Sobic006G241350 Sobic004G096300 Sobic004G096300 Sobic001G465100--Sobic004G096300 Sobic001G053900 Sobic001G053900 Sobic001G465100--Sobic001G053900 Sobic002G367700--Sobic006G241350 Sobic002G367700--Sobic003G123300 Sobic002G367700--Sobic001G078900 Sobic006G051100 Sobic006G051100 Sobic002G367700--Sobic006G051100 Sobic002G367700--Sobic001G465100 Sobic002G367700--Sobic004G325900 Sobic002G016300 Sobic002G016300 Sobic002G367700--Sobic002G016300 Sobic002G367700--Sobic007G028700 Sobic002G367700--Sobic006G241400 Sobic004G325900--Sobic001G078900 Sobic007G154701 Sobic007G154701 Sobic004G325900--Sobic007G154701 Sobic004G325900--Sobic006G241350 Sobic004G325900--Sobic001G465100 Sobic003G147401 Sobic003G147401 Sobic004G325900--Sobic003G147401 Sobic004G325900--Sobic003G123300 Sobic004G325900--Sobic006G241600 Sobic003G379700 Sobic003G379700 Sobic004G325900--Sobic003G379700 Sobic004G325900--Sobic001G032100 Sobic001G032100--Sobic003G296600 Sobic005G085600 Sobic005G085600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic006G194150 Sobic006G194150 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic003G293900 Sobic003G293900 Sobic001G032100--Sobic003G293900 Sobic001G225100 Sobic001G225100 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic007G023700 Sobic007G023700 Sobic004G221900--Sobic007G023700 Sobic001G363100 Sobic001G363100 Sobic004G221900--Sobic001G363100 Sobic009G180200 Sobic009G180200 Sobic004G221900--Sobic009G180200 Sobic007G156500 Sobic007G156500 Sobic004G221900--Sobic007G156500 Sobic004G221900--Sobic003G296600 Sobic002G108800 Sobic002G108800 Sobic004G221900--Sobic002G108800 Sobic006G184300 Sobic006G184300 Sobic004G221900--Sobic006G184300 Sobic004G221900--Sobic001G032100 Sobic002G039500 Sobic002G039500 Sobic004G221900--Sobic002G039500 Sobic001G247400--Sobic003G296600 Sobic001G247400--Sobic001G032100 Sobic001G247400--Sobic001G225100 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic001G247400--Sobic003G293900 Sobic004G164500 Sobic004G164500 Sobic001G247400--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic001G247400--Sobic001G311000 Sobic002G246600 Sobic002G246600 Sobic001G247400--Sobic002G246600 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic003G296600--Sobic004G221900 Sobic003G296600--Sobic001G225100 Sobic003G296600--Sobic006G194150 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic003G296600--Sobic006G184300 Sobic001G078900--Sobic004G325900 Sobic001G078900--Sobic001G465100 Sobic001G078900--Sobic006G241350 Sobic002G226000 Sobic002G226000 Sobic001G078900--Sobic002G226000 Sobic001G078900--Sobic002G367700 Sobic001G078900--Sobic003G123300 Sobic003G178700 Sobic003G178700 Sobic001G078900--Sobic003G178700 Sobic001G078900--Sobic003G147401 Sobic002G380400 Sobic002G380400 Sobic001G078900--Sobic002G380400
Octagon: transcription factors


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