Gene annotation
Transcriptome id Sobic.002G246600.4,Sobic.002G246600.1,Sobic.002G246600.2,Sobic.002G246600.3
Synonym Sb02g028300
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6QDA8 , A0A1B6QDC4 , A0A1B6QDA2 , A0A1B6QDB3
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42280 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os09g31300.2,LOC_Os09g31300.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005089 , Zm00025a014202 , Zm00025a047441
Brachypodium PNT64830 , KQJ90745
Barley HORVU5Hr1G073170.10 , HORVU7Hr1G050530.1 , HORVU5Hr1G073140.1 , HORVU5Hr1G073140.2 , HORVU5Hr1G073140.3 , HORVU5Hr1G073170.9 , HORVU5Hr1G073170.1 , HORVU5Hr1G073170.3 , HORVU5Hr1G073170.2 , HORVU5Hr1G073170.5 , HORVU5Hr1G073170.4 , HORVU5Hr1G073170.6 , HORVU7Hr1G050530.2 , HORVU7Hr1G050530.3 , HORVU7Hr1G050530.6 , HORVU7Hr1G050530.7
Wheat TraesCS5B02G264300 , TraesCS5D02G272800 , TraesCS7B02G145800 , TraesCS7A02G245800 , TraesCS5A02G344300 , TraesCS5A02G264800 , TraesCS7D02G244300
Populus -


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cDNA sequences
Sobic.002G246600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
2 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
3 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
4 Sobic.001G225100 expressed protein -
5 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
6 Sobic.001G038500 ANT1, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
7 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
8 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
9 Sobic.002G226000 leucine-rich repeat family protein, putative, expressed -
10 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
11 Sobic.007G023700 MA3 domain containing protein, expressed -
12 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
13 Sobic.007G035600 MSP domain containing protein, putative, expressed -
14 Sobic.001G465100 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
16 Sobic.009G022000 white-brown complex homolog protein 16, putative, expressed -
17 Sobic.001G078900 MYB(PubMedID : 28944535)@MYB family transcription factor, putative, expressed -
18 Sobic.009G002700 serpin domain containing protein, putative, expressed K13963: serpin B
19 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7


Gene co-expression network
sample Sobic002G246600 Sobic002G246600 Sobic003G296600 Sobic003G296600 Sobic002G246600--Sobic003G296600 Sobic001G032100 Sobic001G032100 Sobic002G246600--Sobic001G032100 Sobic001G247400 Sobic001G247400 Sobic002G246600--Sobic001G247400 Sobic001G225100 Sobic001G225100 Sobic002G246600--Sobic001G225100 Sobic003G324000 Sobic003G324000 Sobic002G246600--Sobic003G324000 Sobic001G038500 Sobic001G038500 Sobic002G246600--Sobic001G038500 Sobic004G221900 Sobic004G221900 Sobic002G246600--Sobic004G221900 Sobic003G293900 Sobic003G293900 Sobic002G246600--Sobic003G293900 Sobic002G226000 Sobic002G226000 Sobic002G246600--Sobic002G226000 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic003G296600--Sobic004G221900 Sobic003G296600--Sobic001G225100 Sobic006G194150 Sobic006G194150 Sobic003G296600--Sobic006G194150 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300 Sobic001G032100--Sobic003G296600 Sobic005G085600 Sobic005G085600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic001G032100--Sobic003G293900 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic001G247400--Sobic003G296600 Sobic001G247400--Sobic001G032100 Sobic001G247400--Sobic001G225100 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic001G247400--Sobic003G293900 Sobic004G164500 Sobic004G164500 Sobic001G247400--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic001G247400--Sobic001G311000 Sobic001G247400--Sobic002G246600 Sobic007G150200 Sobic007G150200 Sobic001G225100--Sobic007G150200 Sobic001G225100--Sobic003G296600 Sobic001G225100--Sobic001G247400 Sobic001G225100--Sobic001G032100 Sobic006G257900 Sobic006G257900 Sobic001G225100--Sobic006G257900 Sobic001G225100--Sobic009G183500 Sobic003G093600 Sobic003G093600 Sobic001G225100--Sobic003G093600 Sobic002G284200 Sobic002G284200 Sobic001G225100--Sobic002G284200 Sobic001G225100--Sobic004G221900 Sobic009G198900 Sobic009G198900 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic005G187200 Sobic005G187200 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic010G280100 Sobic010G280100 Sobic003G324000--Sobic010G280100 Sobic007G205800 Sobic007G205800 Sobic003G324000--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic003G324000--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G324000--Sobic003G258400 Sobic010G092100 Sobic010G092100 Sobic001G038500--Sobic010G092100 Sobic007G159800 Sobic007G159800 Sobic001G038500--Sobic007G159800 Sobic006G204200 Sobic006G204200 Sobic001G038500--Sobic006G204200 Sobic001G038500--Sobic002G246600 Sobic001G361900 Sobic001G361900 Sobic001G038500--Sobic001G361900 Sobic003G057800 Sobic003G057800 Sobic001G038500--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic001G038500--Sobic003G357500 Sobic003G357600 Sobic003G357600 Sobic001G038500--Sobic003G357600 Sobic008G163700 Sobic008G163700 Sobic001G038500--Sobic008G163700 Sobic007G023700 Sobic007G023700 Sobic004G221900--Sobic007G023700 Sobic001G363100 Sobic001G363100 Sobic004G221900--Sobic001G363100 Sobic009G180200 Sobic009G180200 Sobic004G221900--Sobic009G180200 Sobic007G156500 Sobic007G156500 Sobic004G221900--Sobic007G156500 Sobic004G221900--Sobic003G296600 Sobic002G108800 Sobic002G108800 Sobic004G221900--Sobic002G108800 Sobic004G221900--Sobic006G184300 Sobic004G221900--Sobic001G032100 Sobic002G039500 Sobic002G039500 Sobic004G221900--Sobic002G039500 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic002G226000--Sobic009G198900 Sobic002G226000--Sobic003G324000 Sobic007G148200 Sobic007G148200 Sobic002G226000--Sobic007G148200 Sobic001G543800 Sobic001G543800 Sobic002G226000--Sobic001G543800 Sobic001G194900 Sobic001G194900 Sobic002G226000--Sobic001G194900 Sobic004G153400 Sobic004G153400 Sobic002G226000--Sobic004G153400 Sobic002G226000--Sobic010G280100 Sobic006G152600 Sobic006G152600 Sobic002G226000--Sobic006G152600 Sobic002G226000--Sobic009G180200
Octagon: transcription factors


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