Gene annotation
Transcriptome id Sobic.003G293900.1
Synonym Sb03g034430
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
plant-specific domain TIGR01615 family protein, expressed
UniProt C5XK19
Pfam PF04720
Panther DB PTHR31579:SF2 PTHR31579
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32480 : Protein of unknown function (DUF506)
RAP-DB (Rice) LOC_Os01g54340.1 : plant-specific domain TIGR01615 family protein, expressed
MaizeGDB (Corn) Zm00025a027556
Brachypodium KQK09710
Barley -
Wheat TraesCS3A02G274100 , TraesCS3B02G307800 , TraesCS3D02G273300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
2 Sobic.009G030100 expressed protein -
3 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
4 Sobic.006G194150 - -
5 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
6 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
7 Sobic.002G330700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
8 Sobic.001G311000 expansin precursor, putative, expressed -
9 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
10 Sobic.001G230700 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
11 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
12 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
14 Sobic.006G241300 expressed protein -
15 Sobic.001G028800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.006G163100 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
17 Sobic.004G157300 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
18 Sobic.001G516500 expansin precursor, putative, expressed -
19 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G293900 Sobic003G293900 Sobic003G296600 Sobic003G296600 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic001G032100 Sobic001G032100 Sobic003G293900--Sobic001G032100 Sobic006G194150 Sobic006G194150 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic001G247400 Sobic001G247400 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic001G225100 Sobic001G225100 Sobic003G296600--Sobic001G225100 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300 Sobic006G269200 Sobic006G269200 Sobic009G030100--Sobic006G269200 Sobic009G030100--Sobic003G293900 Sobic004G157300 Sobic004G157300 Sobic009G030100--Sobic004G157300 Sobic009G166801 Sobic009G166801 Sobic009G030100--Sobic009G166801 Sobic003G418000 Sobic003G418000 Sobic009G030100--Sobic003G418000 Sobic007G002200 Sobic007G002200 Sobic009G030100--Sobic007G002200 Sobic010G110700 Sobic010G110700 Sobic009G030100--Sobic010G110700 Sobic002G338300 Sobic002G338300 Sobic009G030100--Sobic002G338300 Sobic009G064000 Sobic009G064000 Sobic009G030100--Sobic009G064000 Sobic001G032100--Sobic003G296600 Sobic005G085600 Sobic005G085600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic001G032100--Sobic003G293900 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic006G194150--Sobic001G032100 Sobic005G012000 Sobic005G012000 Sobic006G194150--Sobic005G012000 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic006G194150--Sobic003G293900 Sobic008G126200 Sobic008G126200 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic002G421600--Sobic007G126100 Sobic002G421600--Sobic006G269200 Sobic007G177100 Sobic007G177100 Sobic002G421600--Sobic007G177100 Sobic002G254200 Sobic002G254200 Sobic002G421600--Sobic002G254200 Sobic003G034400 Sobic003G034400 Sobic002G421600--Sobic003G034400 Sobic002G421600--Sobic003G293900 Sobic001G225200 Sobic001G225200 Sobic002G421600--Sobic001G225200 Sobic006G047000 Sobic006G047000 Sobic002G421600--Sobic006G047000 Sobic006G241600 Sobic006G241600 Sobic002G421600--Sobic006G241600 Sobic001G247400--Sobic003G296600 Sobic001G247400--Sobic001G032100 Sobic001G247400--Sobic001G225100 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic001G247400--Sobic003G293900 Sobic004G164500 Sobic004G164500 Sobic001G247400--Sobic004G164500 Sobic001G247400--Sobic001G311000 Sobic001G247400--Sobic002G246600 Sobic006G163100 Sobic006G163100 Sobic002G330700--Sobic006G163100 Sobic002G330700--Sobic003G293900 Sobic003G408200 Sobic003G408200 Sobic002G330700--Sobic003G408200 Sobic006G241300 Sobic006G241300 Sobic002G330700--Sobic006G241300 Sobic002G330700--Sobic002G254200 Sobic002G330700--Sobic003G296600 Sobic002G330700--Sobic007G177100 Sobic002G330700--Sobic004G164500 Sobic002G330700--Sobic007G126100 Sobic001G311000--Sobic004G164500 Sobic009G065000 Sobic009G065000 Sobic001G311000--Sobic009G065000 Sobic006G191600 Sobic006G191600 Sobic001G311000--Sobic006G191600 Sobic001G311000--Sobic007G177100 Sobic003G402300 Sobic003G402300 Sobic001G311000--Sobic003G402300 Sobic001G311000--Sobic007G126100 Sobic008G106800 Sobic008G106800 Sobic001G311000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic001G311000--Sobic006G257900 Sobic001G311000--Sobic003G293900 Sobic007G126100--Sobic007G177100 Sobic004G212900 Sobic004G212900 Sobic007G126100--Sobic004G212900 Sobic007G126100--Sobic002G421600 Sobic007G126100--Sobic002G254200 Sobic009G016201 Sobic009G016201 Sobic007G126100--Sobic009G016201 Sobic009G159200 Sobic009G159200 Sobic007G126100--Sobic009G159200 Sobic004G172700 Sobic004G172700 Sobic007G126100--Sobic004G172700 Sobic006G157500 Sobic006G157500 Sobic007G126100--Sobic006G157500 Sobic002G282400 Sobic002G282400 Sobic007G126100--Sobic002G282400
Octagon: transcription factors


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