Gene annotation
Transcriptome id Sobic.001G028800.1
Synonym Sb01g002720
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
expressed protein
UniProt C5WU37
Pfam -
Panther DB PTHR33872 PTHR33872:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19530 : -
RAP-DB (Rice) LOC_Os03g61150.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G028800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.006G194150 - -
3 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
4 Sobic.001G516500 expansin precursor, putative, expressed -
5 Sobic.006G194300 DUF581 domain containing protein, expressed -
6 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
7 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
8 Sobic.001G363100 universal stress protein domain containing protein, putative, expressed -
9 Sobic.001G230700 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
10 Sobic.003G305400 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
11 Sobic.002G270300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
12 Sobic.004G285800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
13 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
14 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
15 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
16 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
17 Sobic.005G003200 sugar-responsive gene(PubMedID : 25496467)@asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
18 Sobic.009G220900 - -
19 Sobic.003G356700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic001G028800 Sobic001G028800 Sobic003G034500 Sobic003G034500 Sobic001G028800--Sobic003G034500 Sobic006G194150 Sobic006G194150 Sobic001G028800--Sobic006G194150 Sobic003G293900 Sobic003G293900 Sobic001G028800--Sobic003G293900 Sobic001G516500 Sobic001G516500 Sobic001G028800--Sobic001G516500 Sobic006G194300 Sobic006G194300 Sobic001G028800--Sobic006G194300 Sobic008G126200 Sobic008G126200 Sobic001G028800--Sobic008G126200 Sobic006G184300 Sobic006G184300 Sobic001G028800--Sobic006G184300 Sobic001G363100 Sobic001G363100 Sobic001G028800--Sobic001G363100 Sobic001G230700 Sobic001G230700 Sobic001G028800--Sobic001G230700 Sobic009G183500 Sobic009G183500 Sobic003G034500--Sobic009G183500 Sobic003G034500--Sobic001G516500 Sobic001G032100 Sobic001G032100 Sobic003G034500--Sobic001G032100 Sobic003G034500--Sobic008G126200 Sobic001G247400 Sobic001G247400 Sobic003G034500--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic003G034500--Sobic003G296600 Sobic003G034500--Sobic006G194150 Sobic003G034500--Sobic001G363100 Sobic003G034500--Sobic001G028800 Sobic006G194150--Sobic001G032100 Sobic005G012000 Sobic005G012000 Sobic006G194150--Sobic005G012000 Sobic005G085600 Sobic005G085600 Sobic006G194150--Sobic005G085600 Sobic006G194150--Sobic006G194300 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic006G194150--Sobic003G293900 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic001G516500--Sobic003G034500 Sobic008G106800 Sobic008G106800 Sobic001G516500--Sobic008G106800 Sobic001G471900 Sobic001G471900 Sobic001G516500--Sobic001G471900 Sobic001G516500--Sobic001G230700 Sobic009G065000 Sobic009G065000 Sobic001G516500--Sobic009G065000 Sobic004G164500 Sobic004G164500 Sobic001G516500--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic001G516500--Sobic006G241300 Sobic001G516500--Sobic006G194150 Sobic001G516500--Sobic001G028800 Sobic006G194300--Sobic006G194150 Sobic006G194300--Sobic008G126200 Sobic002G324200 Sobic002G324200 Sobic006G194300--Sobic002G324200 Sobic006G194300--Sobic001G028800 Sobic006G194300--Sobic009G183500 Sobic009G178600 Sobic009G178600 Sobic006G194300--Sobic009G178600 Sobic006G194300--Sobic006G184300 Sobic003G305400 Sobic003G305400 Sobic006G194300--Sobic003G305400 Sobic010G042900 Sobic010G042900 Sobic006G194300--Sobic010G042900 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic007G023700 Sobic007G023700 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic001G347600 Sobic001G347600 Sobic008G126200--Sobic001G347600 Sobic008G126200--Sobic005G012000 Sobic003G093600 Sobic003G093600 Sobic008G126200--Sobic003G093600 Sobic002G108800 Sobic002G108800 Sobic008G126200--Sobic002G108800 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic007G156500 Sobic007G156500 Sobic006G184300--Sobic007G156500 Sobic002G039500 Sobic002G039500 Sobic006G184300--Sobic002G039500 Sobic006G184300--Sobic008G126200 Sobic004G221900 Sobic004G221900 Sobic006G184300--Sobic004G221900 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600 Sobic009G180200 Sobic009G180200 Sobic001G363100--Sobic009G180200 Sobic005G003200 Sobic005G003200 Sobic001G363100--Sobic005G003200 Sobic006G249000 Sobic006G249000 Sobic001G363100--Sobic006G249000 Sobic009G078500 Sobic009G078500 Sobic001G363100--Sobic009G078500 Sobic004G199600 Sobic004G199600 Sobic001G363100--Sobic004G199600 Sobic005G130100 Sobic005G130100 Sobic001G363100--Sobic005G130100 Sobic010G146200 Sobic010G146200 Sobic001G363100--Sobic010G146200 Sobic001G363100--Sobic005G085600 Sobic001G363100--Sobic004G221900 Sobic002G291300 Sobic002G291300 Sobic001G230700--Sobic002G291300 Sobic001G230700--Sobic003G296600 Sobic001G230700--Sobic006G184300 Sobic001G230700--Sobic008G106800 Sobic001G230700--Sobic004G164500 Sobic001G230700--Sobic003G293900 Sobic001G230700--Sobic001G516500 Sobic001G230700--Sobic001G311000 Sobic007G150200 Sobic007G150200 Sobic001G230700--Sobic007G150200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.