Gene annotation
Transcriptome id Sobic.003G034500.1
Synonym Sb03g003120, BIT1, ATMYB38, MYB38, RAX2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
myb-like DNA-binding domain containing protein, putative, expressed
UniProt C5XLY8 , Q8S3Z0
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF607
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36890 : Duplicated homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os01g09590.1 : myb-like DNA-binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056272 , Zm00025a002025 , Zm00025a047090 , Zm00025a036037 , Zm00025a013941 , Zm00025a013472 , Zm00025a023045
Brachypodium KQK03128 , PNT70109 , KQJ90325
Barley HORVU3Hr1G019590.1 , HORVU3Hr1G019590.3 , HORVU3Hr1G019590.2 , HORVU2Hr1G081720.2 , HORVU2Hr1G081720.3 , HORVU2Hr1G081720.1 , HORVU2Hr1G081730.1 , HORVU3Hr1G068550.1 , HORVU5Hr1G063410.2 , HORVU5Hr1G063410.1 , HORVU4Hr1G087730.1
Wheat TraesCS3B02G320800 , TraesCS4B02G366600 , TraesCS5A02G534400 , TraesCS5D02G225800 , TraesCS3D02G109800 , TraesCS2A02G331200 , TraesCS5A02G217900 , TraesCS3D02G286300 , TraesCS2D02G331700 , TraesCS4D02G360600 , TraesCS3A02G286600 , TraesCS2B02G351000 , TraesCS5B02G216900 , TraesCS3B02G298200 , TraesCS3A02G108000 , TraesCS5D02G242200 , TraesCS3B02G126800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G183500 expressed protein -
2 Sobic.001G516500 expansin precursor, putative, expressed -
3 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
4 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
5 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
6 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
7 Sobic.006G194150 - -
8 Sobic.001G363100 universal stress protein domain containing protein, putative, expressed -
9 Sobic.001G028800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.007G023700 MA3 domain containing protein, expressed -
11 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
15 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
16 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
17 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
18 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
19 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
20 Sobic.009G022000 white-brown complex homolog protein 16, putative, expressed -


Gene co-expression network
sample Sobic003G034500 Sobic003G034500 Sobic009G183500 Sobic009G183500 Sobic003G034500--Sobic009G183500 Sobic001G516500 Sobic001G516500 Sobic003G034500--Sobic001G516500 Sobic001G032100 Sobic001G032100 Sobic003G034500--Sobic001G032100 Sobic008G126200 Sobic008G126200 Sobic003G034500--Sobic008G126200 Sobic001G247400 Sobic001G247400 Sobic003G034500--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic003G034500--Sobic003G296600 Sobic006G194150 Sobic006G194150 Sobic003G034500--Sobic006G194150 Sobic001G363100 Sobic001G363100 Sobic003G034500--Sobic001G363100 Sobic001G028800 Sobic001G028800 Sobic003G034500--Sobic001G028800 Sobic007G023700 Sobic007G023700 Sobic009G183500--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic009G183500--Sobic003G093600 Sobic002G221900 Sobic002G221900 Sobic009G183500--Sobic002G221900 Sobic004G188300 Sobic004G188300 Sobic009G183500--Sobic004G188300 Sobic002G039500 Sobic002G039500 Sobic009G183500--Sobic002G039500 Sobic009G183500--Sobic003G034500 Sobic009G183500--Sobic008G126200 Sobic004G143700 Sobic004G143700 Sobic009G183500--Sobic004G143700 Sobic006G257900 Sobic006G257900 Sobic009G183500--Sobic006G257900 Sobic001G516500--Sobic003G034500 Sobic008G106800 Sobic008G106800 Sobic001G516500--Sobic008G106800 Sobic001G471900 Sobic001G471900 Sobic001G516500--Sobic001G471900 Sobic001G230700 Sobic001G230700 Sobic001G516500--Sobic001G230700 Sobic009G065000 Sobic009G065000 Sobic001G516500--Sobic009G065000 Sobic004G164500 Sobic004G164500 Sobic001G516500--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic001G516500--Sobic006G241300 Sobic001G516500--Sobic006G194150 Sobic001G516500--Sobic001G028800 Sobic001G032100--Sobic003G296600 Sobic005G085600 Sobic005G085600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic004G221900 Sobic004G221900 Sobic001G032100--Sobic004G221900 Sobic001G032100--Sobic003G034500 Sobic003G293900 Sobic003G293900 Sobic001G032100--Sobic003G293900 Sobic001G225100 Sobic001G225100 Sobic001G032100--Sobic001G225100 Sobic001G032100--Sobic009G183500 Sobic006G184300 Sobic006G184300 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic001G347600 Sobic001G347600 Sobic008G126200--Sobic001G347600 Sobic005G012000 Sobic005G012000 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic002G108800 Sobic002G108800 Sobic008G126200--Sobic002G108800 Sobic001G247400--Sobic003G296600 Sobic001G247400--Sobic001G032100 Sobic001G247400--Sobic001G225100 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic001G247400--Sobic003G293900 Sobic001G247400--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic001G247400--Sobic001G311000 Sobic002G246600 Sobic002G246600 Sobic001G247400--Sobic002G246600 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic003G296600--Sobic004G221900 Sobic003G296600--Sobic001G225100 Sobic003G296600--Sobic006G194150 Sobic003G296600--Sobic002G246600 Sobic003G296600--Sobic001G230700 Sobic003G296600--Sobic006G184300 Sobic006G194150--Sobic001G032100 Sobic006G194150--Sobic005G012000 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic006G194150--Sobic003G293900 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic009G180200 Sobic009G180200 Sobic001G363100--Sobic009G180200 Sobic005G003200 Sobic005G003200 Sobic001G363100--Sobic005G003200 Sobic006G249000 Sobic006G249000 Sobic001G363100--Sobic006G249000 Sobic009G078500 Sobic009G078500 Sobic001G363100--Sobic009G078500 Sobic004G199600 Sobic004G199600 Sobic001G363100--Sobic004G199600 Sobic005G130100 Sobic005G130100 Sobic001G363100--Sobic005G130100 Sobic010G146200 Sobic010G146200 Sobic001G363100--Sobic010G146200 Sobic001G363100--Sobic005G085600 Sobic001G363100--Sobic004G221900 Sobic001G028800--Sobic003G034500 Sobic001G028800--Sobic006G194150 Sobic001G028800--Sobic003G293900 Sobic001G028800--Sobic001G516500 Sobic001G028800--Sobic006G194300 Sobic001G028800--Sobic008G126200 Sobic001G028800--Sobic006G184300 Sobic001G028800--Sobic001G363100 Sobic001G028800--Sobic001G230700
Octagon: transcription factors


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