Gene annotation
Transcriptome id Sobic.001G247400.1
Synonym Sb01g021880
Functional annotation plant-specific domain TIGR01615 family protein, expressed
UniProt C5X1K5
Pfam PF04720
Panther DB PTHR31579 PTHR31579:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38820 : Protein of unknown function (DUF506)
RAP-DB (Rice) LOC_Os10g28210.1 : plant-specific domain TIGR01615 family protein, expressed
MaizeGDB (Corn) Zm00025a006918
Brachypodium KQJ96737 , KQK23504
Barley HORVU4Hr1G073730.4 , HORVU4Hr1G073730.5 , HORVU4Hr1G073730.2 , HORVU4Hr1G073730.3 , HORVU4Hr1G073730.1
Wheat TraesCS4B02G278500 , TraesCS4A02G025500 , TraesCS4D02G277000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G247400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
2 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
3 Sobic.001G225100 expressed protein -
4 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.009G022000 white-brown complex homolog protein 16, putative, expressed -
6 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
7 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
8 Sobic.001G311000 expansin precursor, putative, expressed -
9 Sobic.002G246600 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.008G106800 isoflavone reductase, putative, expressed -
11 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
12 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.006G241600 expressed protein -
14 Sobic.001G471900 C2 domain containing protein, putative, expressed -
15 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
16 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
17 Sobic.006G241350 - -
18 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
19 Sobic.001G230700 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
20 Sobic.009G183500 expressed protein -


Gene co-expression network
sample Sobic001G247400 Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic001G247400--Sobic003G296600 Sobic001G032100 Sobic001G032100 Sobic001G247400--Sobic001G032100 Sobic001G225100 Sobic001G225100 Sobic001G247400--Sobic001G225100 Sobic003G034500 Sobic003G034500 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic003G293900 Sobic003G293900 Sobic001G247400--Sobic003G293900 Sobic004G164500 Sobic004G164500 Sobic001G247400--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic001G247400--Sobic001G311000 Sobic002G246600 Sobic002G246600 Sobic001G247400--Sobic002G246600 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic003G296600--Sobic001G225100 Sobic006G194150 Sobic006G194150 Sobic003G296600--Sobic006G194150 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300 Sobic001G032100--Sobic003G296600 Sobic005G085600 Sobic005G085600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic001G032100--Sobic003G034500 Sobic001G032100--Sobic003G293900 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic007G150200 Sobic007G150200 Sobic001G225100--Sobic007G150200 Sobic001G225100--Sobic003G296600 Sobic001G225100--Sobic001G247400 Sobic001G225100--Sobic001G032100 Sobic006G257900 Sobic006G257900 Sobic001G225100--Sobic006G257900 Sobic001G225100--Sobic009G183500 Sobic003G093600 Sobic003G093600 Sobic001G225100--Sobic003G093600 Sobic002G284200 Sobic002G284200 Sobic001G225100--Sobic002G284200 Sobic001G225100--Sobic004G221900 Sobic003G034500--Sobic009G183500 Sobic001G516500 Sobic001G516500 Sobic003G034500--Sobic001G516500 Sobic003G034500--Sobic001G032100 Sobic008G126200 Sobic008G126200 Sobic003G034500--Sobic008G126200 Sobic003G034500--Sobic001G247400 Sobic003G034500--Sobic003G296600 Sobic003G034500--Sobic006G194150 Sobic001G363100 Sobic001G363100 Sobic003G034500--Sobic001G363100 Sobic001G028800 Sobic001G028800 Sobic003G034500--Sobic001G028800 Sobic009G022000--Sobic007G150200 Sobic007G023700 Sobic007G023700 Sobic009G022000--Sobic007G023700 Sobic009G022000--Sobic003G093600 Sobic009G022000--Sobic001G247400 Sobic009G022000--Sobic009G183500 Sobic007G154701 Sobic007G154701 Sobic009G022000--Sobic007G154701 Sobic004G150400 Sobic004G150400 Sobic009G022000--Sobic004G150400 Sobic009G022000--Sobic001G225100 Sobic004G153600 Sobic004G153600 Sobic009G022000--Sobic004G153600 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic001G471900 Sobic001G471900 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic009G065000 Sobic009G065000 Sobic004G164500--Sobic009G065000 Sobic008G106800 Sobic008G106800 Sobic004G164500--Sobic008G106800 Sobic001G056700 Sobic001G056700 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic004G164500--Sobic006G257900 Sobic010G228600 Sobic010G228600 Sobic004G164500--Sobic010G228600 Sobic007G177100 Sobic007G177100 Sobic004G164500--Sobic007G177100 Sobic001G311000--Sobic004G164500 Sobic001G311000--Sobic009G065000 Sobic006G191600 Sobic006G191600 Sobic001G311000--Sobic006G191600 Sobic001G311000--Sobic007G177100 Sobic003G402300 Sobic003G402300 Sobic001G311000--Sobic003G402300 Sobic001G311000--Sobic007G126100 Sobic001G311000--Sobic008G106800 Sobic001G311000--Sobic006G257900 Sobic001G311000--Sobic003G293900 Sobic002G246600--Sobic003G296600 Sobic002G246600--Sobic001G032100 Sobic002G246600--Sobic001G247400 Sobic002G246600--Sobic001G225100 Sobic003G324000 Sobic003G324000 Sobic002G246600--Sobic003G324000 Sobic001G038500 Sobic001G038500 Sobic002G246600--Sobic001G038500 Sobic002G246600--Sobic004G221900 Sobic002G246600--Sobic003G293900 Sobic002G226000 Sobic002G226000 Sobic002G246600--Sobic002G226000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.