Gene annotation
Transcriptome id Sobic.001G230700.1
Synonym Sb01g020210
Functional annotation RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
UniProt C5WZH5
Pfam PF13639 PF05495 PF14599
Panther DB PTHR21319 PTHR21319:SF11
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K10144; RCHY1, RING finger and CHY zinc finger domain-containing protein 1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G22920 : CHY-type/CTCHY-type/RING-type Zinc finger protein
RAP-DB (Rice) LOC_Os10g31850.1 : RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a006726
Brachypodium KQJ96948
Barley -
Wheat TraesCS1A02G143300 , TraesCS1A02G143300 , TraesCS1A02G143300 , TraesCS1B02G159900 , TraesCS1B02G159900 , TraesCS1B02G159900 , TraesCS1D02G142100
Populus -


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cDNA sequences
Sobic.001G230700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
2 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
3 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
4 Sobic.008G106800 isoflavone reductase, putative, expressed -
5 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
6 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
7 Sobic.001G516500 expansin precursor, putative, expressed -
8 Sobic.001G311000 expansin precursor, putative, expressed -
9 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
10 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
11 Sobic.001G471900 C2 domain containing protein, putative, expressed -
12 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
13 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
14 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
15 Sobic.007G023700 MA3 domain containing protein, expressed -
16 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
17 Sobic.003G137400 OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
18 Sobic.009G022000 white-brown complex homolog protein 16, putative, expressed -
19 Sobic.006G194150 - -
20 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G230700 Sobic001G230700 Sobic002G291300 Sobic002G291300 Sobic001G230700--Sobic002G291300 Sobic003G296600 Sobic003G296600 Sobic001G230700--Sobic003G296600 Sobic006G184300 Sobic006G184300 Sobic001G230700--Sobic006G184300 Sobic008G106800 Sobic008G106800 Sobic001G230700--Sobic008G106800 Sobic004G164500 Sobic004G164500 Sobic001G230700--Sobic004G164500 Sobic003G293900 Sobic003G293900 Sobic001G230700--Sobic003G293900 Sobic001G516500 Sobic001G516500 Sobic001G230700--Sobic001G516500 Sobic001G311000 Sobic001G311000 Sobic001G230700--Sobic001G311000 Sobic007G150200 Sobic007G150200 Sobic001G230700--Sobic007G150200 Sobic001G371300 Sobic001G371300 Sobic002G291300--Sobic001G371300 Sobic001G056700 Sobic001G056700 Sobic002G291300--Sobic001G056700 Sobic003G273100 Sobic003G273100 Sobic002G291300--Sobic003G273100 Sobic001G427800 Sobic001G427800 Sobic002G291300--Sobic001G427800 Sobic002G291300--Sobic001G230700 Sobic001G471900 Sobic001G471900 Sobic002G291300--Sobic001G471900 Sobic007G126100 Sobic007G126100 Sobic002G291300--Sobic007G126100 Sobic001G478300 Sobic001G478300 Sobic002G291300--Sobic001G478300 Sobic002G291300--Sobic004G164500 Sobic001G032100 Sobic001G032100 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic001G247400 Sobic001G247400 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic001G225100 Sobic001G225100 Sobic003G296600--Sobic001G225100 Sobic006G194150 Sobic006G194150 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic003G296600--Sobic001G230700 Sobic003G296600--Sobic006G184300 Sobic002G108800 Sobic002G108800 Sobic006G184300--Sobic002G108800 Sobic007G023700 Sobic007G023700 Sobic006G184300--Sobic007G023700 Sobic007G156500 Sobic007G156500 Sobic006G184300--Sobic007G156500 Sobic002G039500 Sobic002G039500 Sobic006G184300--Sobic002G039500 Sobic008G126200 Sobic008G126200 Sobic006G184300--Sobic008G126200 Sobic006G184300--Sobic004G221900 Sobic005G012000 Sobic005G012000 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic003G093600 Sobic003G093600 Sobic006G184300--Sobic003G093600 Sobic008G106800--Sobic004G164500 Sobic008G106800--Sobic001G471900 Sobic008G106800--Sobic001G056700 Sobic009G065000 Sobic009G065000 Sobic008G106800--Sobic009G065000 Sobic008G106800--Sobic003G273100 Sobic003G137400 Sobic003G137400 Sobic008G106800--Sobic003G137400 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic008G106800--Sobic001G230700 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic004G164500--Sobic009G065000 Sobic004G164500--Sobic008G106800 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic006G257900 Sobic006G257900 Sobic004G164500--Sobic006G257900 Sobic010G228600 Sobic010G228600 Sobic004G164500--Sobic010G228600 Sobic007G177100 Sobic007G177100 Sobic004G164500--Sobic007G177100 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic003G293900--Sobic001G311000 Sobic003G293900--Sobic007G126100 Sobic003G034500 Sobic003G034500 Sobic001G516500--Sobic003G034500 Sobic001G516500--Sobic008G106800 Sobic001G516500--Sobic001G471900 Sobic001G516500--Sobic001G230700 Sobic001G516500--Sobic009G065000 Sobic001G516500--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic001G516500--Sobic006G241300 Sobic001G516500--Sobic006G194150 Sobic001G028800 Sobic001G028800 Sobic001G516500--Sobic001G028800 Sobic001G311000--Sobic004G164500 Sobic001G311000--Sobic009G065000 Sobic006G191600 Sobic006G191600 Sobic001G311000--Sobic006G191600 Sobic001G311000--Sobic007G177100 Sobic003G402300 Sobic003G402300 Sobic001G311000--Sobic003G402300 Sobic001G311000--Sobic007G126100 Sobic001G311000--Sobic008G106800 Sobic001G311000--Sobic006G257900 Sobic001G311000--Sobic003G293900 Sobic002G284200 Sobic002G284200 Sobic007G150200--Sobic002G284200 Sobic003G117000 Sobic003G117000 Sobic007G150200--Sobic003G117000 Sobic007G150200--Sobic007G023700 Sobic007G150200--Sobic003G093600 Sobic004G188300 Sobic004G188300 Sobic007G150200--Sobic004G188300 Sobic007G150200--Sobic001G225100 Sobic005G167300 Sobic005G167300 Sobic007G150200--Sobic005G167300 Sobic010G218500 Sobic010G218500 Sobic007G150200--Sobic010G218500 Sobic010G218100 Sobic010G218100 Sobic007G150200--Sobic010G218100
Octagon: transcription factors


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