Gene annotation
Transcriptome id Sobic.006G269200.1
Synonym Sb06g033080
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
stem-specific protein TSJT1, putative, expressed
UniProt C5YAK8
Pfam PF12481
Panther DB PTHR11772 PTHR11772:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27450 : Aluminium induced protein with YGL and LRDR motifs
RAP-DB (Rice) LOC_Os04g58280.2 : stem-specific protein TSJT1, putative, expressed
MaizeGDB (Corn) Zm00025a057392
Brachypodium PNT62150
Barley HORVU2Hr1G118570.2 , HORVU2Hr1G118570.1 , HORVU2Hr1G118550.1 , HORVU2Hr1G118550.3 , HORVU2Hr1G118550.2
Wheat TraesCS2A02G586500 , TraesCS2D02G600100 , TraesCSU02G021600
Populus -


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cDNA sequences
Sobic.006G269200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G254200 expressed protein -
2 Sobic.009G030100 expressed protein -
3 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
4 Sobic.009G064000 expressed protein -
5 Sobic.001G225200 expressed protein -
6 Sobic.010G030401 - -
7 Sobic.001G225300 - -
8 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
10 Sobic.009G100800 expressed protein -
11 Sobic.003G418000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leucoanthocyanidin dioxygenase, putative, expressed -
12 Sobic.001G047700 expressed protein -
13 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
14 Sobic.002G328300 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
15 Sobic.003G406900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
17 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
18 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
19 Sobic.001G223100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
20 Sobic.006G047000 CBS domain containing membrane protein, putative, expressed -


Gene co-expression network
sample Sobic006G269200 Sobic006G269200 Sobic002G254200 Sobic002G254200 Sobic006G269200--Sobic002G254200 Sobic009G030100 Sobic009G030100 Sobic006G269200--Sobic009G030100 Sobic002G421600 Sobic002G421600 Sobic006G269200--Sobic002G421600 Sobic009G064000 Sobic009G064000 Sobic006G269200--Sobic009G064000 Sobic001G225200 Sobic001G225200 Sobic006G269200--Sobic001G225200 Sobic010G030401 Sobic010G030401 Sobic006G269200--Sobic010G030401 Sobic001G225300 Sobic001G225300 Sobic006G269200--Sobic001G225300 Sobic007G177100 Sobic007G177100 Sobic006G269200--Sobic007G177100 Sobic007G126100 Sobic007G126100 Sobic006G269200--Sobic007G126100 Sobic002G254200--Sobic001G225200 Sobic002G254200--Sobic001G225300 Sobic002G254200--Sobic006G269200 Sobic006G154500 Sobic006G154500 Sobic002G254200--Sobic006G154500 Sobic002G254200--Sobic007G177100 Sobic006G191600 Sobic006G191600 Sobic002G254200--Sobic006G191600 Sobic009G159200 Sobic009G159200 Sobic002G254200--Sobic009G159200 Sobic006G157500 Sobic006G157500 Sobic002G254200--Sobic006G157500 Sobic002G254200--Sobic007G126100 Sobic009G030100--Sobic006G269200 Sobic003G293900 Sobic003G293900 Sobic009G030100--Sobic003G293900 Sobic004G157300 Sobic004G157300 Sobic009G030100--Sobic004G157300 Sobic009G166801 Sobic009G166801 Sobic009G030100--Sobic009G166801 Sobic003G418000 Sobic003G418000 Sobic009G030100--Sobic003G418000 Sobic007G002200 Sobic007G002200 Sobic009G030100--Sobic007G002200 Sobic010G110700 Sobic010G110700 Sobic009G030100--Sobic010G110700 Sobic002G338300 Sobic002G338300 Sobic009G030100--Sobic002G338300 Sobic009G030100--Sobic009G064000 Sobic002G421600--Sobic007G126100 Sobic002G421600--Sobic006G269200 Sobic002G421600--Sobic007G177100 Sobic002G421600--Sobic002G254200 Sobic003G034400 Sobic003G034400 Sobic002G421600--Sobic003G034400 Sobic002G421600--Sobic003G293900 Sobic002G421600--Sobic001G225200 Sobic006G047000 Sobic006G047000 Sobic002G421600--Sobic006G047000 Sobic006G241600 Sobic006G241600 Sobic002G421600--Sobic006G241600 Sobic009G064000--Sobic006G269200 Sobic009G100800 Sobic009G100800 Sobic009G064000--Sobic009G100800 Sobic009G064000--Sobic001G225300 Sobic009G064000--Sobic010G030401 Sobic009G064000--Sobic001G225200 Sobic009G064000--Sobic002G254200 Sobic001G530350 Sobic001G530350 Sobic009G064000--Sobic001G530350 Sobic009G064000--Sobic009G030100 Sobic009G064000--Sobic006G154500 Sobic001G225200--Sobic001G225300 Sobic001G225200--Sobic002G254200 Sobic001G225200--Sobic006G157500 Sobic001G225200--Sobic006G191600 Sobic003G406900 Sobic003G406900 Sobic001G225200--Sobic003G406900 Sobic001G225200--Sobic006G269200 Sobic001G225200--Sobic007G177100 Sobic001G225200--Sobic006G154500 Sobic003G265200 Sobic003G265200 Sobic001G225200--Sobic003G265200 Sobic010G030401--Sobic007G177100 Sobic010G030401--Sobic009G159200 Sobic003G360000 Sobic003G360000 Sobic010G030401--Sobic003G360000 Sobic010G030401--Sobic002G254200 Sobic010G030401--Sobic006G269200 Sobic009G075900 Sobic009G075900 Sobic010G030401--Sobic009G075900 Sobic009G230100 Sobic009G230100 Sobic010G030401--Sobic009G230100 Sobic010G030401--Sobic006G154500 Sobic009G221400 Sobic009G221400 Sobic010G030401--Sobic009G221400 Sobic001G225300--Sobic001G225200 Sobic001G225300--Sobic002G254200 Sobic001G225300--Sobic006G154500 Sobic001G225300--Sobic006G269200 Sobic001G225300--Sobic003G406900 Sobic004G161751 Sobic004G161751 Sobic001G225300--Sobic004G161751 Sobic010G175800 Sobic010G175800 Sobic001G225300--Sobic010G175800 Sobic001G225600 Sobic001G225600 Sobic001G225300--Sobic001G225600 Sobic001G225300--Sobic009G064000 Sobic007G177100--Sobic009G159200 Sobic007G177100--Sobic007G126100 Sobic004G212900 Sobic004G212900 Sobic007G177100--Sobic004G212900 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic007G177100--Sobic010G030401 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic007G177100--Sobic003G360000 Sobic007G126100--Sobic007G177100 Sobic007G126100--Sobic004G212900 Sobic007G126100--Sobic002G421600 Sobic007G126100--Sobic002G254200 Sobic009G016201 Sobic009G016201 Sobic007G126100--Sobic009G016201 Sobic007G126100--Sobic009G159200 Sobic004G172700 Sobic004G172700 Sobic007G126100--Sobic004G172700 Sobic007G126100--Sobic006G157500 Sobic002G282400 Sobic002G282400 Sobic007G126100--Sobic002G282400
Octagon: transcription factors


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