Gene annotation
Transcriptome id Sobic.003G418000.1
Synonym Sb03g045170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
leucoanthocyanidin dioxygenase, putative, expressed
UniProt C5XH53
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF169
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G21420 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g70930.1 : leucoanthocyanidin dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a026111
Brachypodium KQK11410
Barley HORVU3Hr1G098580.2
Wheat TraesCS3A02G457700 , TraesCS3B02G497900 , TraesCS3D02G450500
Populus -


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cDNA sequences
Sobic.003G418000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G106800 - -
2 Sobic.002G254200 expressed protein -
3 Sobic.001G223100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
4 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
5 Sobic.009G030100 expressed protein -
6 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
7 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
8 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
9 Sobic.002G328300 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
10 Sobic.001G225300 - -
11 Sobic.001G225200 expressed protein -
12 Sobic.010G030401 - -
13 Sobic.001G082400 cytochrome P450, putative, expressed -
14 Sobic.007G107000 pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
15 Sobic.005G195100 expressed protein -
16 Sobic.002G212200 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
17 Sobic.002G282400 expressed protein -
18 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
19 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.007G068800 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4


Gene co-expression network
sample Sobic003G418000 Sobic003G418000 Sobic006G106800 Sobic006G106800 Sobic003G418000--Sobic006G106800 Sobic002G254200 Sobic002G254200 Sobic003G418000--Sobic002G254200 Sobic001G223100 Sobic001G223100 Sobic003G418000--Sobic001G223100 Sobic006G269200 Sobic006G269200 Sobic003G418000--Sobic006G269200 Sobic009G030100 Sobic009G030100 Sobic003G418000--Sobic009G030100 Sobic001G415500 Sobic001G415500 Sobic003G418000--Sobic001G415500 Sobic002G291300 Sobic002G291300 Sobic003G418000--Sobic002G291300 Sobic007G126100 Sobic007G126100 Sobic003G418000--Sobic007G126100 Sobic002G328300 Sobic002G328300 Sobic003G418000--Sobic002G328300 Sobic005G092900 Sobic005G092900 Sobic006G106800--Sobic005G092900 Sobic009G077800 Sobic009G077800 Sobic006G106800--Sobic009G077800 Sobic002G353900 Sobic002G353900 Sobic006G106800--Sobic002G353900 Sobic001G400700 Sobic001G400700 Sobic006G106800--Sobic001G400700 Sobic009G143400 Sobic009G143400 Sobic006G106800--Sobic009G143400 Sobic009G139400 Sobic009G139400 Sobic006G106800--Sobic009G139400 Sobic004G101300 Sobic004G101300 Sobic006G106800--Sobic004G101300 Sobic003G393700 Sobic003G393700 Sobic006G106800--Sobic003G393700 Sobic004G050000 Sobic004G050000 Sobic006G106800--Sobic004G050000 Sobic001G225200 Sobic001G225200 Sobic002G254200--Sobic001G225200 Sobic001G225300 Sobic001G225300 Sobic002G254200--Sobic001G225300 Sobic002G254200--Sobic006G269200 Sobic006G154500 Sobic006G154500 Sobic002G254200--Sobic006G154500 Sobic007G177100 Sobic007G177100 Sobic002G254200--Sobic007G177100 Sobic006G191600 Sobic006G191600 Sobic002G254200--Sobic006G191600 Sobic009G159200 Sobic009G159200 Sobic002G254200--Sobic009G159200 Sobic006G157500 Sobic006G157500 Sobic002G254200--Sobic006G157500 Sobic002G254200--Sobic007G126100 Sobic001G223100--Sobic001G225200 Sobic001G047700 Sobic001G047700 Sobic001G223100--Sobic001G047700 Sobic004G172700 Sobic004G172700 Sobic001G223100--Sobic004G172700 Sobic001G223100--Sobic003G418000 Sobic001G223100--Sobic002G328300 Sobic001G223100--Sobic002G254200 Sobic001G223100--Sobic007G126100 Sobic001G223100--Sobic006G106800 Sobic001G082400 Sobic001G082400 Sobic001G223100--Sobic001G082400 Sobic006G269200--Sobic002G254200 Sobic006G269200--Sobic009G030100 Sobic002G421600 Sobic002G421600 Sobic006G269200--Sobic002G421600 Sobic009G064000 Sobic009G064000 Sobic006G269200--Sobic009G064000 Sobic006G269200--Sobic001G225200 Sobic010G030401 Sobic010G030401 Sobic006G269200--Sobic010G030401 Sobic006G269200--Sobic001G225300 Sobic006G269200--Sobic007G177100 Sobic006G269200--Sobic007G126100 Sobic009G030100--Sobic006G269200 Sobic003G293900 Sobic003G293900 Sobic009G030100--Sobic003G293900 Sobic004G157300 Sobic004G157300 Sobic009G030100--Sobic004G157300 Sobic009G166801 Sobic009G166801 Sobic009G030100--Sobic009G166801 Sobic009G030100--Sobic003G418000 Sobic007G002200 Sobic007G002200 Sobic009G030100--Sobic007G002200 Sobic010G110700 Sobic010G110700 Sobic009G030100--Sobic010G110700 Sobic002G338300 Sobic002G338300 Sobic009G030100--Sobic002G338300 Sobic009G030100--Sobic009G064000 Sobic001G007200 Sobic001G007200 Sobic001G415500--Sobic001G007200 Sobic008G161800 Sobic008G161800 Sobic001G415500--Sobic008G161800 Sobic003G253000 Sobic003G253000 Sobic001G415500--Sobic003G253000 Sobic009G146100 Sobic009G146100 Sobic001G415500--Sobic009G146100 Sobic006G108400 Sobic006G108400 Sobic001G415500--Sobic006G108400 Sobic006G141500 Sobic006G141500 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic001G371300 Sobic001G371300 Sobic002G291300--Sobic001G371300 Sobic001G056700 Sobic001G056700 Sobic002G291300--Sobic001G056700 Sobic003G273100 Sobic003G273100 Sobic002G291300--Sobic003G273100 Sobic001G427800 Sobic001G427800 Sobic002G291300--Sobic001G427800 Sobic001G230700 Sobic001G230700 Sobic002G291300--Sobic001G230700 Sobic001G471900 Sobic001G471900 Sobic002G291300--Sobic001G471900 Sobic002G291300--Sobic007G126100 Sobic001G478300 Sobic001G478300 Sobic002G291300--Sobic001G478300 Sobic004G164500 Sobic004G164500 Sobic002G291300--Sobic004G164500 Sobic007G126100--Sobic007G177100 Sobic004G212900 Sobic004G212900 Sobic007G126100--Sobic004G212900 Sobic007G126100--Sobic002G421600 Sobic007G126100--Sobic002G254200 Sobic009G016201 Sobic009G016201 Sobic007G126100--Sobic009G016201 Sobic007G126100--Sobic009G159200 Sobic007G126100--Sobic004G172700 Sobic007G126100--Sobic006G157500 Sobic002G282400 Sobic002G282400 Sobic007G126100--Sobic002G282400 Sobic003G285500 Sobic003G285500 Sobic002G328300--Sobic003G285500 Sobic002G328300--Sobic009G143400 Sobic003G265200 Sobic003G265200 Sobic002G328300--Sobic003G265200 Sobic002G328300--Sobic006G106800 Sobic009G254900 Sobic009G254900 Sobic002G328300--Sobic009G254900 Sobic005G229700 Sobic005G229700 Sobic002G328300--Sobic005G229700 Sobic002G367400 Sobic002G367400 Sobic002G328300--Sobic002G367400 Sobic008G034500 Sobic008G034500 Sobic002G328300--Sobic008G034500 Sobic009G221400 Sobic009G221400 Sobic002G328300--Sobic009G221400
Octagon: transcription factors


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