Gene annotation
Transcriptome id Sobic.007G068800.1
Synonym NRPD12, Sb07g005435, NRPB12, NRPE12
Functional annotation DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed
UniProt C5X533
Pfam PF03604
Panther DB PTHR12056
NCBI CDD KOG3507; DNA-directed RNA polymerase, subunit RPB7.0
KEGG Orthology K03009; RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G41010 : DNA directed RNA polymerase, 7 kDa subunit
RAP-DB (Rice) LOC_Os01g34614.1 : DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK16431 , KQJ95680
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
2 Sobic.001G138300 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
3 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
4 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
5 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
6 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
7 Sobic.005G026800 pentatricopeptide, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
8 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.006G212100 expressed protein -
10 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
11 Sobic.009G199700 expressed protein -
12 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
13 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
14 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
15 Sobic.001G054200 green ripe-like, putative, expressed -
16 Sobic.009G028800 OsFBX115 - F-box domain containing protein, expressed -
17 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
18 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
19 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
20 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3


Gene co-expression network
sample Sobic007G068800 Sobic007G068800 Sobic003G000800 Sobic003G000800 Sobic007G068800--Sobic003G000800 Sobic001G138300 Sobic001G138300 Sobic007G068800--Sobic001G138300 Sobic007G203700 Sobic007G203700 Sobic007G068800--Sobic007G203700 Sobic001G073000 Sobic001G073000 Sobic007G068800--Sobic001G073000 Sobic009G246950 Sobic009G246950 Sobic007G068800--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic007G068800--Sobic004G079100 Sobic005G026800 Sobic005G026800 Sobic007G068800--Sobic005G026800 Sobic006G256500 Sobic006G256500 Sobic007G068800--Sobic006G256500 Sobic006G212100 Sobic006G212100 Sobic007G068800--Sobic006G212100 Sobic003G000800--Sobic009G246950 Sobic001G031200 Sobic001G031200 Sobic003G000800--Sobic001G031200 Sobic001G078500 Sobic001G078500 Sobic003G000800--Sobic001G078500 Sobic004G253000 Sobic004G253000 Sobic003G000800--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G000800--Sobic001G512600 Sobic001G371300 Sobic001G371300 Sobic003G000800--Sobic001G371300 Sobic010G083700 Sobic010G083700 Sobic003G000800--Sobic010G083700 Sobic001G149700 Sobic001G149700 Sobic003G000800--Sobic001G149700 Sobic007G186300 Sobic007G186300 Sobic003G000800--Sobic007G186300 Sobic001G138300--Sobic004G079100 Sobic003G350600 Sobic003G350600 Sobic001G138300--Sobic003G350600 Sobic001G430800 Sobic001G430800 Sobic001G138300--Sobic001G430800 Sobic004G231400 Sobic004G231400 Sobic001G138300--Sobic004G231400 Sobic001G054200 Sobic001G054200 Sobic001G138300--Sobic001G054200 Sobic001G138300--Sobic006G212100 Sobic001G441600 Sobic001G441600 Sobic001G138300--Sobic001G441600 Sobic006G263900 Sobic006G263900 Sobic001G138300--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G138300--Sobic002G129000 Sobic007G203700--Sobic009G246950 Sobic001G529000 Sobic001G529000 Sobic007G203700--Sobic001G529000 Sobic010G193800 Sobic010G193800 Sobic007G203700--Sobic010G193800 Sobic007G203700--Sobic006G263900 Sobic002G256300 Sobic002G256300 Sobic007G203700--Sobic002G256300 Sobic004G300900 Sobic004G300900 Sobic007G203700--Sobic004G300900 Sobic007G203700--Sobic001G054200 Sobic004G060600 Sobic004G060600 Sobic007G203700--Sobic004G060600 Sobic007G203700--Sobic001G078500 Sobic009G228800 Sobic009G228800 Sobic001G073000--Sobic009G228800 Sobic001G073000--Sobic010G083700 Sobic001G007200 Sobic001G007200 Sobic001G073000--Sobic001G007200 Sobic001G415500 Sobic001G415500 Sobic001G073000--Sobic001G415500 Sobic001G073000--Sobic007G186300 Sobic001G073000--Sobic001G054200 Sobic001G073000--Sobic009G246950 Sobic010G253800 Sobic010G253800 Sobic001G073000--Sobic010G253800 Sobic003G248600 Sobic003G248600 Sobic001G073000--Sobic003G248600 Sobic009G246950--Sobic002G256300 Sobic009G246950--Sobic007G203700 Sobic010G168600 Sobic010G168600 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic009G246950--Sobic001G054200 Sobic009G246950--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic009G246950--Sobic001G007200 Sobic004G293700 Sobic004G293700 Sobic004G079100--Sobic004G293700 Sobic004G079100--Sobic001G138300 Sobic004G079100--Sobic001G054200 Sobic004G079100--Sobic010G083700 Sobic003G115800 Sobic003G115800 Sobic004G079100--Sobic003G115800 Sobic004G079100--Sobic007G186300 Sobic004G079100--Sobic009G246950 Sobic004G079100--Sobic009G171700 Sobic004G079100--Sobic001G371300 Sobic006G241300 Sobic006G241300 Sobic005G026800--Sobic006G241300 Sobic003G208700 Sobic003G208700 Sobic005G026800--Sobic003G208700 Sobic005G026800--Sobic007G068800 Sobic003G408200 Sobic003G408200 Sobic005G026800--Sobic003G408200 Sobic007G063700 Sobic007G063700 Sobic005G026800--Sobic007G063700 Sobic005G026600 Sobic005G026600 Sobic005G026800--Sobic005G026600 Sobic005G110520 Sobic005G110520 Sobic005G026800--Sobic005G110520 Sobic006G019801 Sobic006G019801 Sobic005G026800--Sobic006G019801 Sobic003G201850 Sobic003G201850 Sobic005G026800--Sobic003G201850 Sobic009G036900 Sobic009G036900 Sobic006G256500--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic006G256500--Sobic002G068300 Sobic004G248800 Sobic004G248800 Sobic006G256500--Sobic004G248800 Sobic007G163700 Sobic007G163700 Sobic006G256500--Sobic007G163700 Sobic006G256500--Sobic001G529000 Sobic010G039800 Sobic010G039800 Sobic006G256500--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic006G256500--Sobic009G016201 Sobic001G162000 Sobic001G162000 Sobic006G256500--Sobic001G162000 Sobic010G243200 Sobic010G243200 Sobic006G256500--Sobic010G243200 Sobic006G212100--Sobic001G054200 Sobic009G198500 Sobic009G198500 Sobic006G212100--Sobic009G198500 Sobic001G314500 Sobic001G314500 Sobic006G212100--Sobic001G314500 Sobic006G212100--Sobic006G263900 Sobic002G400000 Sobic002G400000 Sobic006G212100--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic006G212100--Sobic007G168600 Sobic009G174900 Sobic009G174900 Sobic006G212100--Sobic009G174900 Sobic006G212100--Sobic010G083700 Sobic001G005900 Sobic001G005900 Sobic006G212100--Sobic001G005900
Octagon: transcription factors


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