Gene annotation
Transcriptome id Sobic.001G138300.1
Synonym Sb01g012070
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WPP0
Pfam PF13920
Panther DB PTHR12313 PTHR12313:SF7
NCBI CDD KOG0823; Predicted E3 ubiquitin ligase
KEGG Orthology K10666; E3 ubiquitin-protein ligase RNF5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23780 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g47500.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007480 , Zm00025a017119
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
2 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
3 Sobic.001G430800 GA17271-PA, putative, expressed -
4 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
5 Sobic.001G054200 green ripe-like, putative, expressed -
6 Sobic.006G212100 expressed protein -
7 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
8 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
9 Sobic.002G129000 RING zinc finger protein, putative, expressed -
10 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
11 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
12 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
13 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
14 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
15 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
16 Sobic.006G262900 expressed protein -
17 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
18 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
19 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -
20 Sobic.001G420700 clathrin assembly protein, putative, expressed -


Gene co-expression network
sample Sobic001G138300 Sobic001G138300 Sobic004G079100 Sobic004G079100 Sobic001G138300--Sobic004G079100 Sobic003G350600 Sobic003G350600 Sobic001G138300--Sobic003G350600 Sobic001G430800 Sobic001G430800 Sobic001G138300--Sobic001G430800 Sobic004G231400 Sobic004G231400 Sobic001G138300--Sobic004G231400 Sobic001G054200 Sobic001G054200 Sobic001G138300--Sobic001G054200 Sobic006G212100 Sobic006G212100 Sobic001G138300--Sobic006G212100 Sobic001G441600 Sobic001G441600 Sobic001G138300--Sobic001G441600 Sobic006G263900 Sobic006G263900 Sobic001G138300--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G138300--Sobic002G129000 Sobic004G293700 Sobic004G293700 Sobic004G079100--Sobic004G293700 Sobic004G079100--Sobic001G138300 Sobic004G079100--Sobic001G054200 Sobic010G083700 Sobic010G083700 Sobic004G079100--Sobic010G083700 Sobic003G115800 Sobic003G115800 Sobic004G079100--Sobic003G115800 Sobic007G186300 Sobic007G186300 Sobic004G079100--Sobic007G186300 Sobic009G246950 Sobic009G246950 Sobic004G079100--Sobic009G246950 Sobic009G171700 Sobic009G171700 Sobic004G079100--Sobic009G171700 Sobic001G371300 Sobic001G371300 Sobic004G079100--Sobic001G371300 Sobic004G072800 Sobic004G072800 Sobic003G350600--Sobic004G072800 Sobic001G512600 Sobic001G512600 Sobic003G350600--Sobic001G512600 Sobic003G007500 Sobic003G007500 Sobic003G350600--Sobic003G007500 Sobic008G142700 Sobic008G142700 Sobic003G350600--Sobic008G142700 Sobic003G226500 Sobic003G226500 Sobic003G350600--Sobic003G226500 Sobic001G427800 Sobic001G427800 Sobic003G350600--Sobic001G427800 Sobic009G232400 Sobic009G232400 Sobic003G350600--Sobic009G232400 Sobic001G061700 Sobic001G061700 Sobic003G350600--Sobic001G061700 Sobic001G067900 Sobic001G067900 Sobic003G350600--Sobic001G067900 Sobic001G430800--Sobic002G129000 Sobic001G430800--Sobic003G350600 Sobic001G430800--Sobic001G138300 Sobic009G050700 Sobic009G050700 Sobic001G430800--Sobic009G050700 Sobic006G194500 Sobic006G194500 Sobic001G430800--Sobic006G194500 Sobic004G059000 Sobic004G059000 Sobic001G430800--Sobic004G059000 Sobic001G430800--Sobic003G007500 Sobic001G430800--Sobic006G263900 Sobic010G055500 Sobic010G055500 Sobic001G430800--Sobic010G055500 Sobic004G231400--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G231400--Sobic010G071200 Sobic001G478300 Sobic001G478300 Sobic004G231400--Sobic001G478300 Sobic001G149700 Sobic001G149700 Sobic004G231400--Sobic001G149700 Sobic004G274700 Sobic004G274700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic006G257900 Sobic006G257900 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic006G209500 Sobic006G209500 Sobic004G231400--Sobic006G209500 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic001G054200--Sobic003G115800 Sobic006G212100--Sobic001G054200 Sobic009G198500 Sobic009G198500 Sobic006G212100--Sobic009G198500 Sobic001G314500 Sobic001G314500 Sobic006G212100--Sobic001G314500 Sobic006G212100--Sobic006G263900 Sobic002G400000 Sobic002G400000 Sobic006G212100--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic006G212100--Sobic007G168600 Sobic009G174900 Sobic009G174900 Sobic006G212100--Sobic009G174900 Sobic006G212100--Sobic010G083700 Sobic001G005900 Sobic001G005900 Sobic006G212100--Sobic001G005900 Sobic003G116700 Sobic003G116700 Sobic001G441600--Sobic003G116700 Sobic008G161000 Sobic008G161000 Sobic001G441600--Sobic008G161000 Sobic001G335400 Sobic001G335400 Sobic001G441600--Sobic001G335400 Sobic009G016201 Sobic009G016201 Sobic001G441600--Sobic009G016201 Sobic003G396000 Sobic003G396000 Sobic001G441600--Sobic003G396000 Sobic009G152200 Sobic009G152200 Sobic001G441600--Sobic009G152200 Sobic001G441600--Sobic003G115800 Sobic001G441600--Sobic010G071200 Sobic003G317200 Sobic003G317200 Sobic001G441600--Sobic003G317200 Sobic006G263900--Sobic010G083700 Sobic006G263900--Sobic001G054200 Sobic010G168600 Sobic010G168600 Sobic006G263900--Sobic010G168600 Sobic001G395400 Sobic001G395400 Sobic006G263900--Sobic001G395400 Sobic001G078500 Sobic001G078500 Sobic006G263900--Sobic001G078500 Sobic006G263900--Sobic006G212100 Sobic010G253800 Sobic010G253800 Sobic006G263900--Sobic010G253800 Sobic006G263900--Sobic009G246950 Sobic006G263900--Sobic003G007500 Sobic006G183000 Sobic006G183000 Sobic002G129000--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic002G129000--Sobic001G439600 Sobic002G129000--Sobic009G050700 Sobic001G294900 Sobic001G294900 Sobic002G129000--Sobic001G294900 Sobic002G129000--Sobic002G400000 Sobic002G129000--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G129000--Sobic001G136900 Sobic002G129000--Sobic006G263900 Sobic003G405700 Sobic003G405700 Sobic002G129000--Sobic003G405700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.