Gene annotation
Transcriptome id Sobic.004G157300.1
Synonym SRG3, Sb04g021010
Functional annotation "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)" (PubMedID : 24655390)
glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt C5XSN8
Pfam PF03009
Panther DB PTHR22958 PTHR22958:SF9
NCBI CDD KOG2421; Predicted starch-binding protein
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT3G02040 : senescence-related gene 3
RAP-DB (Rice) LOC_Os02g31030.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a011719 , Zm00025a020433
Brachypodium KQJ99618
Barley -
Wheat TraesCS2A02G285900 , TraesCS3B02G370300 , TraesCS2D02G284700 , TraesCS3D02G332200 , TraesCS2B02G303200
Populus -


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cDNA sequences
Sobic.004G157300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G030100 expressed protein -
2 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
3 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
4 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
5 Sobic.001G516500 expansin precursor, putative, expressed -
6 Sobic.006G241300 expressed protein -
7 Sobic.001G471900 C2 domain containing protein, putative, expressed -
8 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
9 Sobic.006G194150 - -
10 Sobic.003G408200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
12 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.004G172700 plant neutral invertase domain containing protein, expressed -
15 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
16 Sobic.002G278300 thaumatin, putative, expressed -
17 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
18 Sobic.001G311000 expansin precursor, putative, expressed -
19 Sobic.002G330700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
20 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -


Gene co-expression network
sample Sobic004G157300 Sobic004G157300 Sobic009G030100 Sobic009G030100 Sobic004G157300--Sobic009G030100 Sobic003G293900 Sobic003G293900 Sobic004G157300--Sobic003G293900 Sobic001G056700 Sobic001G056700 Sobic004G157300--Sobic001G056700 Sobic004G164500 Sobic004G164500 Sobic004G157300--Sobic004G164500 Sobic001G516500 Sobic001G516500 Sobic004G157300--Sobic001G516500 Sobic006G241300 Sobic006G241300 Sobic004G157300--Sobic006G241300 Sobic001G471900 Sobic001G471900 Sobic004G157300--Sobic001G471900 Sobic003G296600 Sobic003G296600 Sobic004G157300--Sobic003G296600 Sobic006G194150 Sobic006G194150 Sobic004G157300--Sobic006G194150 Sobic006G269200 Sobic006G269200 Sobic009G030100--Sobic006G269200 Sobic009G030100--Sobic003G293900 Sobic009G030100--Sobic004G157300 Sobic009G166801 Sobic009G166801 Sobic009G030100--Sobic009G166801 Sobic003G418000 Sobic003G418000 Sobic009G030100--Sobic003G418000 Sobic007G002200 Sobic007G002200 Sobic009G030100--Sobic007G002200 Sobic010G110700 Sobic010G110700 Sobic009G030100--Sobic010G110700 Sobic002G338300 Sobic002G338300 Sobic009G030100--Sobic002G338300 Sobic009G064000 Sobic009G064000 Sobic009G030100--Sobic009G064000 Sobic003G293900--Sobic003G296600 Sobic003G293900--Sobic009G030100 Sobic001G032100 Sobic001G032100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic001G247400 Sobic001G247400 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic001G056700--Sobic001G471900 Sobic002G291300 Sobic002G291300 Sobic001G056700--Sobic002G291300 Sobic010G228600 Sobic010G228600 Sobic001G056700--Sobic010G228600 Sobic010G144400 Sobic010G144400 Sobic001G056700--Sobic010G144400 Sobic001G056700--Sobic004G164500 Sobic001G082400 Sobic001G082400 Sobic001G056700--Sobic001G082400 Sobic001G371300 Sobic001G371300 Sobic001G056700--Sobic001G371300 Sobic003G273100 Sobic003G273100 Sobic001G056700--Sobic003G273100 Sobic002G278300 Sobic002G278300 Sobic001G056700--Sobic002G278300 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic009G065000 Sobic009G065000 Sobic004G164500--Sobic009G065000 Sobic008G106800 Sobic008G106800 Sobic004G164500--Sobic008G106800 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic006G257900 Sobic006G257900 Sobic004G164500--Sobic006G257900 Sobic004G164500--Sobic010G228600 Sobic007G177100 Sobic007G177100 Sobic004G164500--Sobic007G177100 Sobic003G034500 Sobic003G034500 Sobic001G516500--Sobic003G034500 Sobic001G516500--Sobic008G106800 Sobic001G516500--Sobic001G471900 Sobic001G230700 Sobic001G230700 Sobic001G516500--Sobic001G230700 Sobic001G516500--Sobic009G065000 Sobic001G516500--Sobic004G164500 Sobic001G516500--Sobic006G241300 Sobic001G516500--Sobic006G194150 Sobic001G028800 Sobic001G028800 Sobic001G516500--Sobic001G028800 Sobic003G406900 Sobic003G406900 Sobic006G241300--Sobic003G406900 Sobic003G408200 Sobic003G408200 Sobic006G241300--Sobic003G408200 Sobic006G241300--Sobic004G164500 Sobic005G026800 Sobic005G026800 Sobic006G241300--Sobic005G026800 Sobic006G241300--Sobic003G296600 Sobic002G254200 Sobic002G254200 Sobic006G241300--Sobic002G254200 Sobic006G241300--Sobic002G278300 Sobic006G241300--Sobic003G293900 Sobic006G191600 Sobic006G191600 Sobic006G241300--Sobic006G191600 Sobic001G471900--Sobic001G056700 Sobic001G471900--Sobic004G164500 Sobic001G471900--Sobic008G106800 Sobic001G471900--Sobic010G228600 Sobic001G471900--Sobic010G154150 Sobic001G471900--Sobic002G291300 Sobic001G471900--Sobic006G257900 Sobic001G471900--Sobic010G144400 Sobic001G471900--Sobic003G273100 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic001G225100 Sobic001G225100 Sobic003G296600--Sobic001G225100 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300 Sobic006G194150--Sobic001G032100 Sobic005G012000 Sobic005G012000 Sobic006G194150--Sobic005G012000 Sobic005G085600 Sobic005G085600 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic006G194150--Sobic003G293900 Sobic008G126200 Sobic008G126200 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300
Octagon: transcription factors


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