Gene annotation
Transcriptome id Sobic.006G163100.2,Sobic.006G163100.1
Synonym Sb06g023960, SbBBX13, B-box (BBX) protein
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
B-box zinc finger family protein, putative, expressed
UniProt C5YD09 , A0A1Z5RE66
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G75540 : salt tolerance homolog2
RAP-DB (Rice) LOC_Os04g45690.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020944 , Zm00025a032155 , Zm00025a018468 , Zm00025a056617 , Zm00025a010390 , Zm00025a021250
Brachypodium KQK17523 , KQK00540 , KQJ83834 , KQJ83833
Barley HORVU2Hr1G092460.9 , HORVU2Hr1G092460.8 , HORVU2Hr1G092460.4 , HORVU2Hr1G092460.1 , HORVU2Hr1G092460.3 , HORVU2Hr1G092460.2 , HORVU2Hr1G092460.5 , HORVU2Hr1G092460.20 , HORVU2Hr1G092460.7 , HORVU2Hr1G092460.6 , HORVU7Hr1G091180.2 , HORVU7Hr1G091180.3 , HORVU7Hr1G091180.1 , HORVU7Hr1G091180.6 , HORVU7Hr1G091180.4 , HORVU7Hr1G091180.5 , HORVU2Hr1G092460.19 , HORVU2Hr1G092460.18 , HORVU2Hr1G092460.11 , HORVU2Hr1G092460.10 , HORVU2Hr1G092460.13 , HORVU2Hr1G092460.12 , HORVU2Hr1G092460.15 , HORVU2Hr1G092460.14 , HORVU2Hr1G092460.17 , HORVU2Hr1G092460.16
Wheat TraesCS2A02G388500 , TraesCS2A02G388500 , TraesCS2A02G388500 , TraesCS7A02G383400 , TraesCS7A02G383400 , TraesCS7A02G383400 , TraesCS6A02G239300 , TraesCS2D02G386300 , TraesCS7B02G286300 , TraesCS7B02G286300 , TraesCS7D02G379900 , TraesCS7D02G379900 , TraesCS7B02G286300 , TraesCS2D02G386300 , TraesCS6D02G221700 , TraesCS6B02G285200 , TraesCS2B02G406600 , TraesCS2B02G406600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G330700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
2 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
3 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
4 Sobic.002G254200 expressed protein -
5 Sobic.004G035200 - -
6 Sobic.009G100800 expressed protein -
7 Sobic.003G402300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@P21-Rho-binding domain containing protein, putative, expressed -
8 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
9 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
10 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
11 Sobic.003G408200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
13 Sobic.002G246600 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.004G279700 expressed protein -
15 Sobic.001G497500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
17 Sobic.008G045450 - -
18 Sobic.008G106800 isoflavone reductase, putative, expressed -
19 Sobic.006G241300 expressed protein -
20 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase


Gene co-expression network
sample Sobic006G163100 Sobic006G163100 Sobic002G330700 Sobic002G330700 Sobic006G163100--Sobic002G330700 Sobic003G293900 Sobic003G293900 Sobic006G163100--Sobic003G293900 Sobic003G296600 Sobic003G296600 Sobic006G163100--Sobic003G296600 Sobic002G254200 Sobic002G254200 Sobic006G163100--Sobic002G254200 Sobic004G035200 Sobic004G035200 Sobic006G163100--Sobic004G035200 Sobic009G100800 Sobic009G100800 Sobic006G163100--Sobic009G100800 Sobic003G402300 Sobic003G402300 Sobic006G163100--Sobic003G402300 Sobic001G247400 Sobic001G247400 Sobic006G163100--Sobic001G247400 Sobic006G269200 Sobic006G269200 Sobic006G163100--Sobic006G269200 Sobic002G330700--Sobic006G163100 Sobic002G330700--Sobic003G293900 Sobic003G408200 Sobic003G408200 Sobic002G330700--Sobic003G408200 Sobic006G241300 Sobic006G241300 Sobic002G330700--Sobic006G241300 Sobic002G330700--Sobic002G254200 Sobic002G330700--Sobic003G296600 Sobic007G177100 Sobic007G177100 Sobic002G330700--Sobic007G177100 Sobic004G164500 Sobic004G164500 Sobic002G330700--Sobic004G164500 Sobic007G126100 Sobic007G126100 Sobic002G330700--Sobic007G126100 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic001G032100 Sobic001G032100 Sobic003G293900--Sobic001G032100 Sobic006G194150 Sobic006G194150 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic003G293900--Sobic007G126100 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic001G225100 Sobic001G225100 Sobic003G296600--Sobic001G225100 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300 Sobic001G225200 Sobic001G225200 Sobic002G254200--Sobic001G225200 Sobic001G225300 Sobic001G225300 Sobic002G254200--Sobic001G225300 Sobic002G254200--Sobic006G269200 Sobic006G154500 Sobic006G154500 Sobic002G254200--Sobic006G154500 Sobic002G254200--Sobic007G177100 Sobic006G191600 Sobic006G191600 Sobic002G254200--Sobic006G191600 Sobic009G159200 Sobic009G159200 Sobic002G254200--Sobic009G159200 Sobic006G157500 Sobic006G157500 Sobic002G254200--Sobic006G157500 Sobic002G254200--Sobic007G126100 Sobic004G166400 Sobic004G166400 Sobic004G035200--Sobic004G166400 Sobic004G179600 Sobic004G179600 Sobic004G035200--Sobic004G179600 Sobic006G157200 Sobic006G157200 Sobic004G035200--Sobic006G157200 Sobic010G057100 Sobic010G057100 Sobic004G035200--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G035200--Sobic004G335600 Sobic004G035200--Sobic006G163100 Sobic009G075900 Sobic009G075900 Sobic004G035200--Sobic009G075900 Sobic006G274700 Sobic006G274700 Sobic004G035200--Sobic006G274700 Sobic004G035200--Sobic002G254200 Sobic009G064000 Sobic009G064000 Sobic009G100800--Sobic009G064000 Sobic009G100800--Sobic002G254200 Sobic001G530350 Sobic001G530350 Sobic009G100800--Sobic001G530350 Sobic009G100800--Sobic001G225300 Sobic009G100800--Sobic006G269200 Sobic001G225600 Sobic001G225600 Sobic009G100800--Sobic001G225600 Sobic009G100800--Sobic002G421600 Sobic010G030401 Sobic010G030401 Sobic009G100800--Sobic010G030401 Sobic003G013600 Sobic003G013600 Sobic009G100800--Sobic003G013600 Sobic003G402300--Sobic006G157500 Sobic003G402300--Sobic007G177100 Sobic003G402300--Sobic004G164500 Sobic002G353800 Sobic002G353800 Sobic003G402300--Sobic002G353800 Sobic002G339100 Sobic002G339100 Sobic003G402300--Sobic002G339100 Sobic003G402300--Sobic001G311000 Sobic003G402300--Sobic009G159200 Sobic007G090463 Sobic007G090463 Sobic003G402300--Sobic007G090463 Sobic001G372100 Sobic001G372100 Sobic003G402300--Sobic001G372100 Sobic001G247400--Sobic003G296600 Sobic001G247400--Sobic001G032100 Sobic001G247400--Sobic001G225100 Sobic003G034500 Sobic003G034500 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic001G247400--Sobic003G293900 Sobic001G247400--Sobic004G164500 Sobic001G247400--Sobic001G311000 Sobic001G247400--Sobic002G246600 Sobic006G269200--Sobic002G254200 Sobic006G269200--Sobic009G030100 Sobic006G269200--Sobic002G421600 Sobic006G269200--Sobic009G064000 Sobic006G269200--Sobic001G225200 Sobic006G269200--Sobic010G030401 Sobic006G269200--Sobic001G225300 Sobic006G269200--Sobic007G177100 Sobic006G269200--Sobic007G126100
Octagon: transcription factors


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