Gene annotation
Transcriptome id Sobic.004G279700.1
Synonym ATOXS3, OXS3, Sb04g031630
Functional annotation expressed protein
UniProt C5Y0W7
Pfam -
Panther DB PTHR33172 PTHR33172:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56550 : oxidative stress 3
RAP-DB (Rice) LOC_Os02g45930.1 : expressed protein
MaizeGDB (Corn) Zm00025a021549
Brachypodium KQK00804
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G279700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G400200 plant-specific domain TIGR01615 family protein, expressed -
2 Sobic.006G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
3 Sobic.002G254200 expressed protein -
4 Sobic.006G241350 - -
5 Sobic.003G290300 expressed protein -
6 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
7 Sobic.001G225200 expressed protein -
8 Sobic.001G225300 - -
9 Sobic.006G191600 expressed protein -
10 Sobic.003G331600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX168 - F-box domain containing protein, expressed -
11 Sobic.008G135600 osmotin, putative, expressed -
12 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -
13 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
14 Sobic.001G225600 expressed protein -
15 Sobic.006G206000 WRKY68, expressed -
16 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
17 Sobic.008G036900 MYB family transcription factor, putative, expressed -
18 Sobic.001G032000 peptide transporter PTR2, putative, expressed -
19 Sobic.003G395400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@BTBZ2 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
20 Sobic.006G269250 - -


Gene co-expression network
sample Sobic004G279700 Sobic004G279700 Sobic003G400200 Sobic003G400200 Sobic004G279700--Sobic003G400200 Sobic006G241400 Sobic006G241400 Sobic004G279700--Sobic006G241400 Sobic002G254200 Sobic002G254200 Sobic004G279700--Sobic002G254200 Sobic006G241350 Sobic006G241350 Sobic004G279700--Sobic006G241350 Sobic003G290300 Sobic003G290300 Sobic004G279700--Sobic003G290300 Sobic002G421600 Sobic002G421600 Sobic004G279700--Sobic002G421600 Sobic001G225200 Sobic001G225200 Sobic004G279700--Sobic001G225200 Sobic001G225300 Sobic001G225300 Sobic004G279700--Sobic001G225300 Sobic006G191600 Sobic006G191600 Sobic004G279700--Sobic006G191600 Sobic003G400200--Sobic004G279700 Sobic006G269250 Sobic006G269250 Sobic003G400200--Sobic006G269250 Sobic003G400200--Sobic006G241400 Sobic003G400200--Sobic001G225200 Sobic003G400200--Sobic002G421600 Sobic001G225600 Sobic001G225600 Sobic003G400200--Sobic001G225600 Sobic003G400200--Sobic001G225300 Sobic003G400200--Sobic002G254200 Sobic008G036900 Sobic008G036900 Sobic003G400200--Sobic008G036900 Sobic006G241400--Sobic004G279700 Sobic006G241400--Sobic006G241350 Sobic006G241400--Sobic003G400200 Sobic006G241600 Sobic006G241600 Sobic006G241400--Sobic006G241600 Sobic006G241400--Sobic002G421600 Sobic007G126100 Sobic007G126100 Sobic006G241400--Sobic007G126100 Sobic006G241400--Sobic008G036900 Sobic003G395400 Sobic003G395400 Sobic006G241400--Sobic003G395400 Sobic006G241400--Sobic002G254200 Sobic002G254200--Sobic001G225200 Sobic002G254200--Sobic001G225300 Sobic006G269200 Sobic006G269200 Sobic002G254200--Sobic006G269200 Sobic006G154500 Sobic006G154500 Sobic002G254200--Sobic006G154500 Sobic007G177100 Sobic007G177100 Sobic002G254200--Sobic007G177100 Sobic002G254200--Sobic006G191600 Sobic009G159200 Sobic009G159200 Sobic002G254200--Sobic009G159200 Sobic006G157500 Sobic006G157500 Sobic002G254200--Sobic006G157500 Sobic002G254200--Sobic007G126100 Sobic006G241350--Sobic006G241400 Sobic006G241350--Sobic004G279700 Sobic004G325900 Sobic004G325900 Sobic006G241350--Sobic004G325900 Sobic006G241350--Sobic006G241600 Sobic007G028700 Sobic007G028700 Sobic006G241350--Sobic007G028700 Sobic002G367700 Sobic002G367700 Sobic006G241350--Sobic002G367700 Sobic001G078900 Sobic001G078900 Sobic006G241350--Sobic001G078900 Sobic003G123300 Sobic003G123300 Sobic006G241350--Sobic003G123300 Sobic001G465100 Sobic001G465100 Sobic006G241350--Sobic001G465100 Sobic001G032000 Sobic001G032000 Sobic003G290300--Sobic001G032000 Sobic003G290300--Sobic006G157500 Sobic002G328400 Sobic002G328400 Sobic003G290300--Sobic002G328400 Sobic003G265200 Sobic003G265200 Sobic003G290300--Sobic003G265200 Sobic002G405600 Sobic002G405600 Sobic003G290300--Sobic002G405600 Sobic006G206000 Sobic006G206000 Sobic003G290300--Sobic006G206000 Sobic001G481100 Sobic001G481100 Sobic003G290300--Sobic001G481100 Sobic003G202200 Sobic003G202200 Sobic003G290300--Sobic003G202200 Sobic004G212900 Sobic004G212900 Sobic003G290300--Sobic004G212900 Sobic002G421600--Sobic007G126100 Sobic002G421600--Sobic006G269200 Sobic002G421600--Sobic007G177100 Sobic002G421600--Sobic002G254200 Sobic003G034400 Sobic003G034400 Sobic002G421600--Sobic003G034400 Sobic003G293900 Sobic003G293900 Sobic002G421600--Sobic003G293900 Sobic002G421600--Sobic001G225200 Sobic006G047000 Sobic006G047000 Sobic002G421600--Sobic006G047000 Sobic002G421600--Sobic006G241600 Sobic001G225200--Sobic001G225300 Sobic001G225200--Sobic002G254200 Sobic001G225200--Sobic006G157500 Sobic001G225200--Sobic006G191600 Sobic003G406900 Sobic003G406900 Sobic001G225200--Sobic003G406900 Sobic001G225200--Sobic006G269200 Sobic001G225200--Sobic007G177100 Sobic001G225200--Sobic006G154500 Sobic001G225200--Sobic003G265200 Sobic001G225300--Sobic001G225200 Sobic001G225300--Sobic002G254200 Sobic001G225300--Sobic006G154500 Sobic001G225300--Sobic006G269200 Sobic001G225300--Sobic003G406900 Sobic004G161751 Sobic004G161751 Sobic001G225300--Sobic004G161751 Sobic010G175800 Sobic010G175800 Sobic001G225300--Sobic010G175800 Sobic001G225300--Sobic001G225600 Sobic009G064000 Sobic009G064000 Sobic001G225300--Sobic009G064000 Sobic006G191600--Sobic002G254200 Sobic006G191600--Sobic001G225200 Sobic006G191600--Sobic003G406900 Sobic001G311000 Sobic001G311000 Sobic006G191600--Sobic001G311000 Sobic001G082400 Sobic001G082400 Sobic006G191600--Sobic001G082400 Sobic003G048000 Sobic003G048000 Sobic006G191600--Sobic003G048000 Sobic006G191600--Sobic006G157500 Sobic004G164500 Sobic004G164500 Sobic006G191600--Sobic004G164500 Sobic003G402300 Sobic003G402300 Sobic006G191600--Sobic003G402300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.