Gene annotation
Transcriptome id Sobic.003G331600.1
Synonym Sb03g037710
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsFBX168 - F-box domain containing protein, expressed
UniProt C5XN51
Pfam -
Panther DB PTHR31215 PTHR31215:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46170 : F-box family protein
RAP-DB (Rice) LOC_Os05g41130.1 : OsFBX168 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037829 , Zm00025a027131
Brachypodium PNT73068 , KQK10260
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G331600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G290300 expressed protein -
2 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
3 Sobic.002G405600 early response to dehydration 15, putative, expressed -
4 Sobic.003G271201 - -
5 Sobic.001G037000 PHD finger protein, putative, expressed -
6 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
7 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
8 Sobic.003G162700 expressed protein -
9 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
10 Sobic.004G279700 expressed protein -
11 Sobic.006G206000 WRKY68, expressed -
12 Sobic.002G354900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed -
13 Sobic.006G158266 - -
14 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
15 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
16 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
17 Sobic.001G486100 expressed protein -
18 Sobic.002G269300 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
19 Sobic.001G032000 peptide transporter PTR2, putative, expressed -
20 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor


Gene co-expression network
sample Sobic003G331600 Sobic003G331600 Sobic003G290300 Sobic003G290300 Sobic003G331600--Sobic003G290300 Sobic010G135000 Sobic010G135000 Sobic003G331600--Sobic010G135000 Sobic002G405600 Sobic002G405600 Sobic003G331600--Sobic002G405600 Sobic003G271201 Sobic003G271201 Sobic003G331600--Sobic003G271201 Sobic001G037000 Sobic001G037000 Sobic003G331600--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G331600--Sobic009G023200 Sobic003G181500 Sobic003G181500 Sobic003G331600--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic003G331600--Sobic003G162700 Sobic002G245800 Sobic002G245800 Sobic003G331600--Sobic002G245800 Sobic001G032000 Sobic001G032000 Sobic003G290300--Sobic001G032000 Sobic006G157500 Sobic006G157500 Sobic003G290300--Sobic006G157500 Sobic002G328400 Sobic002G328400 Sobic003G290300--Sobic002G328400 Sobic003G265200 Sobic003G265200 Sobic003G290300--Sobic003G265200 Sobic003G290300--Sobic002G405600 Sobic006G206000 Sobic006G206000 Sobic003G290300--Sobic006G206000 Sobic001G481100 Sobic001G481100 Sobic003G290300--Sobic001G481100 Sobic003G202200 Sobic003G202200 Sobic003G290300--Sobic003G202200 Sobic004G212900 Sobic004G212900 Sobic003G290300--Sobic004G212900 Sobic003G130800 Sobic003G130800 Sobic010G135000--Sobic003G130800 Sobic006G180200 Sobic006G180200 Sobic010G135000--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic010G135000--Sobic002G345300 Sobic010G135000--Sobic003G181500 Sobic001G459200 Sobic001G459200 Sobic010G135000--Sobic001G459200 Sobic010G135000--Sobic009G023200 Sobic003G350300 Sobic003G350300 Sobic010G135000--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic010G135000--Sobic004G330700 Sobic009G185800 Sobic009G185800 Sobic010G135000--Sobic009G185800 Sobic002G405600--Sobic002G245800 Sobic003G324400 Sobic003G324400 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic010G204600 Sobic010G204600 Sobic002G405600--Sobic010G204600 Sobic009G247900 Sobic009G247900 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic006G263600 Sobic006G263600 Sobic002G405600--Sobic006G263600 Sobic001G259700 Sobic001G259700 Sobic002G405600--Sobic001G259700 Sobic001G095300 Sobic001G095300 Sobic002G405600--Sobic001G095300 Sobic003G271201--Sobic006G206000 Sobic003G271201--Sobic003G290300 Sobic009G232266 Sobic009G232266 Sobic003G271201--Sobic009G232266 Sobic003G271201--Sobic004G212900 Sobic003G271201--Sobic003G162700 Sobic004G010300 Sobic004G010300 Sobic003G271201--Sobic004G010300 Sobic003G271201--Sobic003G331600 Sobic003G271201--Sobic010G135000 Sobic009G236800 Sobic009G236800 Sobic003G271201--Sobic009G236800 Sobic003G249800 Sobic003G249800 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic001G037000--Sobic003G181500 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic009G023200--Sobic010G204600 Sobic009G023200--Sobic003G063200 Sobic009G023200--Sobic001G067601 Sobic002G046100 Sobic002G046100 Sobic009G023200--Sobic002G046100 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic001G281400 Sobic001G281400 Sobic003G181500--Sobic001G281400 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100 Sobic003G162700--Sobic001G067601 Sobic009G070400 Sobic009G070400 Sobic003G162700--Sobic009G070400 Sobic002G333400 Sobic002G333400 Sobic003G162700--Sobic002G333400 Sobic006G158600 Sobic006G158600 Sobic003G162700--Sobic006G158600 Sobic003G334600 Sobic003G334600 Sobic003G162700--Sobic003G334600 Sobic010G238600 Sobic010G238600 Sobic003G162700--Sobic010G238600 Sobic010G274900 Sobic010G274900 Sobic003G162700--Sobic010G274900 Sobic007G025500 Sobic007G025500 Sobic003G162700--Sobic007G025500 Sobic008G136400 Sobic008G136400 Sobic003G162700--Sobic008G136400 Sobic002G245800--Sobic002G405600 Sobic001G040200 Sobic001G040200 Sobic002G245800--Sobic001G040200 Sobic002G245800--Sobic003G324400 Sobic002G245800--Sobic009G247900 Sobic002G245800--Sobic001G422900 Sobic002G245800--Sobic009G023200 Sobic002G245800--Sobic001G095300 Sobic002G140300 Sobic002G140300 Sobic002G245800--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G245800--Sobic006G179500
Octagon: transcription factors


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