Gene annotation
Transcriptome id Sobic.001G486100.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QQ73
Pfam -
Panther DB PTHR36616 PTHR36616:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52105 : -
RAP-DB (Rice) LOC_Os03g07870.1 : expressed protein
MaizeGDB (Corn) Zm00025a008052 , Zm00025a023223
Brachypodium KQK23362
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G486100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G261200 expressed protein -
2 Sobic.003G279500 serine acetyltransferase 1(PubMedID : 26465154)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
3 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
5 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
6 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
7 Sobic.006G190500 expressed protein -
8 Sobic.001G138600 VQ domain containing protein, putative, expressed -
9 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
11 Sobic.001G477600 zinc finger protein, putative, expressed -
12 Sobic.004G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
13 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
18 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
19 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
20 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase


Gene co-expression network
sample Sobic001G486100 Sobic001G486100 Sobic002G261200 Sobic002G261200 Sobic001G486100--Sobic002G261200 Sobic003G279500 Sobic003G279500 Sobic001G486100--Sobic003G279500 Sobic010G198600 Sobic010G198600 Sobic001G486100--Sobic010G198600 Sobic006G190100 Sobic006G190100 Sobic001G486100--Sobic006G190100 Sobic004G212900 Sobic004G212900 Sobic001G486100--Sobic004G212900 Sobic006G230900 Sobic006G230900 Sobic001G486100--Sobic006G230900 Sobic006G190500 Sobic006G190500 Sobic001G486100--Sobic006G190500 Sobic001G138600 Sobic001G138600 Sobic001G486100--Sobic001G138600 Sobic001G107800 Sobic001G107800 Sobic001G486100--Sobic001G107800 Sobic002G261200--Sobic001G107800 Sobic002G068600 Sobic002G068600 Sobic002G261200--Sobic002G068600 Sobic001G254100 Sobic001G254100 Sobic002G261200--Sobic001G254100 Sobic010G032100 Sobic010G032100 Sobic002G261200--Sobic010G032100 Sobic003G394400 Sobic003G394400 Sobic002G261200--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic002G261200--Sobic004G166200 Sobic002G389000 Sobic002G389000 Sobic002G261200--Sobic002G389000 Sobic007G214400 Sobic007G214400 Sobic002G261200--Sobic007G214400 Sobic001G149800 Sobic001G149800 Sobic002G261200--Sobic001G149800 Sobic007G074000 Sobic007G074000 Sobic003G279500--Sobic007G074000 Sobic003G228900 Sobic003G228900 Sobic003G279500--Sobic003G228900 Sobic003G279500--Sobic001G138600 Sobic007G169700 Sobic007G169700 Sobic003G279500--Sobic007G169700 Sobic009G184000 Sobic009G184000 Sobic003G279500--Sobic009G184000 Sobic004G237800 Sobic004G237800 Sobic003G279500--Sobic004G237800 Sobic001G112200 Sobic001G112200 Sobic003G279500--Sobic001G112200 Sobic004G141200 Sobic004G141200 Sobic003G279500--Sobic004G141200 Sobic003G369100 Sobic003G369100 Sobic003G279500--Sobic003G369100 Sobic001G280800 Sobic001G280800 Sobic010G198600--Sobic001G280800 Sobic010G198600--Sobic001G138600 Sobic003G382800 Sobic003G382800 Sobic010G198600--Sobic003G382800 Sobic001G169500 Sobic001G169500 Sobic010G198600--Sobic001G169500 Sobic004G336500 Sobic004G336500 Sobic010G198600--Sobic004G336500 Sobic010G198600--Sobic006G190100 Sobic010G198600--Sobic002G261200 Sobic003G432700 Sobic003G432700 Sobic010G198600--Sobic003G432700 Sobic010G198600--Sobic009G184000 Sobic001G443800 Sobic001G443800 Sobic006G190100--Sobic001G443800 Sobic006G190100--Sobic001G138600 Sobic006G190100--Sobic006G190500 Sobic007G213800 Sobic007G213800 Sobic006G190100--Sobic007G213800 Sobic006G190100--Sobic002G261200 Sobic003G148600 Sobic003G148600 Sobic006G190100--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic006G190100--Sobic001G371800 Sobic001G391500 Sobic001G391500 Sobic006G190100--Sobic001G391500 Sobic006G190100--Sobic010G198600 Sobic006G157500 Sobic006G157500 Sobic004G212900--Sobic006G157500 Sobic007G177100 Sobic007G177100 Sobic004G212900--Sobic007G177100 Sobic004G212900--Sobic003G382800 Sobic010G274900 Sobic010G274900 Sobic004G212900--Sobic010G274900 Sobic002G335300 Sobic002G335300 Sobic004G212900--Sobic002G335300 Sobic009G074100 Sobic009G074100 Sobic004G212900--Sobic009G074100 Sobic001G477600 Sobic001G477600 Sobic004G212900--Sobic001G477600 Sobic002G291900 Sobic002G291900 Sobic004G212900--Sobic002G291900 Sobic003G357300 Sobic003G357300 Sobic004G212900--Sobic003G357300 Sobic006G231200 Sobic006G231200 Sobic006G230900--Sobic006G231200 Sobic006G231100 Sobic006G231100 Sobic006G230900--Sobic006G231100 Sobic002G282300 Sobic002G282300 Sobic006G230900--Sobic002G282300 Sobic006G230900--Sobic007G213800 Sobic010G217800 Sobic010G217800 Sobic006G230900--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic006G230900--Sobic002G415600 Sobic003G144700 Sobic003G144700 Sobic006G230900--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic006G230900--Sobic003G123600 Sobic003G197200 Sobic003G197200 Sobic006G230900--Sobic003G197200 Sobic006G230800 Sobic006G230800 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190500--Sobic006G190100 Sobic006G190500--Sobic002G415600 Sobic006G190500--Sobic006G230900 Sobic009G111200 Sobic009G111200 Sobic006G190500--Sobic009G111200 Sobic006G190500--Sobic010G217800 Sobic006G190500--Sobic003G144700 Sobic010G220200 Sobic010G220200 Sobic006G190500--Sobic010G220200 Sobic001G138600--Sobic003G382800 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G138600--Sobic001G391500 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600
Octagon: transcription factors


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