Gene annotation
Transcriptome id Sobic.004G004400.1
Synonym Sb04g000580
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
lactate/malate dehydrogenase, putative, expressed
UniProt C5XRJ6
Pfam PF02866 PF00056
Panther DB PTHR11540 PTHR11540:SF3
NCBI CDD KOG1495; Lactate dehydrogenase
KEGG Orthology K00016; LDH, L-lactate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0016491oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G17260 : Lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g01510.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a018644 , Zm00025a018645
Brachypodium KQJ95166
Barley HORVU6Hr1G015500.4 , HORVU6Hr1G015500.3 , HORVU6Hr1G015500.2 , HORVU6Hr1G015500.1 , HORVU2Hr1G012830.1
Wheat TraesCS2A02G076600 , TraesCS6D02G078300 , TraesCS6B02G029700 , TraesCS6A02G085300 , TraesCS2B02G091400 , TraesCS6B02G116700 , TraesCS6B02G116700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G004400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
4 Sobic.003G142300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.001G279300 Up-reguralion under heat(PubMedID : 24916767)@VQ domain containing protein, putative, expressed -
7 Sobic.002G261200 expressed protein -
8 Sobic.006G054800 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
9 Sobic.003G362700 cytochrome P450, putative, expressed -
10 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
11 Sobic.009G077500 gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
12 Sobic.006G190500 expressed protein -
13 Sobic.001G138600 VQ domain containing protein, putative, expressed -
14 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
15 Sobic.001G487600 Lectin protein kinase family protein("PubMedID : 26759170,PubMedID : 24597475")@protein kinase domain containing protein, expressed -
16 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
17 Sobic.009G179500 expressed protein -
18 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
19 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
20 Sobic.003G345600 expressed protein -


Gene co-expression network
sample Sobic004G004400 Sobic004G004400 Sobic001G280800 Sobic001G280800 Sobic004G004400--Sobic001G280800 Sobic010G198600 Sobic010G198600 Sobic004G004400--Sobic010G198600 Sobic006G190100 Sobic006G190100 Sobic004G004400--Sobic006G190100 Sobic003G142300 Sobic003G142300 Sobic004G004400--Sobic003G142300 Sobic009G148100 Sobic009G148100 Sobic004G004400--Sobic009G148100 Sobic001G279300 Sobic001G279300 Sobic004G004400--Sobic001G279300 Sobic002G261200 Sobic002G261200 Sobic004G004400--Sobic002G261200 Sobic006G054800 Sobic006G054800 Sobic004G004400--Sobic006G054800 Sobic003G362700 Sobic003G362700 Sobic004G004400--Sobic003G362700 Sobic001G280800--Sobic010G198600 Sobic004G336500 Sobic004G336500 Sobic001G280800--Sobic004G336500 Sobic001G280800--Sobic001G279300 Sobic009G069800 Sobic009G069800 Sobic001G280800--Sobic009G069800 Sobic001G280800--Sobic004G004400 Sobic010G225251 Sobic010G225251 Sobic001G280800--Sobic010G225251 Sobic009G145700 Sobic009G145700 Sobic001G280800--Sobic009G145700 Sobic008G066401 Sobic008G066401 Sobic001G280800--Sobic008G066401 Sobic004G109900 Sobic004G109900 Sobic001G280800--Sobic004G109900 Sobic010G198600--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic010G198600--Sobic001G138600 Sobic003G382800 Sobic003G382800 Sobic010G198600--Sobic003G382800 Sobic001G169500 Sobic001G169500 Sobic010G198600--Sobic001G169500 Sobic010G198600--Sobic004G336500 Sobic010G198600--Sobic006G190100 Sobic010G198600--Sobic002G261200 Sobic003G432700 Sobic003G432700 Sobic010G198600--Sobic003G432700 Sobic009G184000 Sobic009G184000 Sobic010G198600--Sobic009G184000 Sobic001G443800 Sobic001G443800 Sobic006G190100--Sobic001G443800 Sobic006G190100--Sobic001G138600 Sobic006G190500 Sobic006G190500 Sobic006G190100--Sobic006G190500 Sobic007G213800 Sobic007G213800 Sobic006G190100--Sobic007G213800 Sobic006G190100--Sobic002G261200 Sobic003G148600 Sobic003G148600 Sobic006G190100--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic006G190100--Sobic001G371800 Sobic001G391500 Sobic001G391500 Sobic006G190100--Sobic001G391500 Sobic006G190100--Sobic010G198600 Sobic002G189100 Sobic002G189100 Sobic003G142300--Sobic002G189100 Sobic009G192600 Sobic009G192600 Sobic003G142300--Sobic009G192600 Sobic003G142300--Sobic003G362700 Sobic001G259400 Sobic001G259400 Sobic003G142300--Sobic001G259400 Sobic006G101100 Sobic006G101100 Sobic003G142300--Sobic006G101100 Sobic004G064500 Sobic004G064500 Sobic003G142300--Sobic004G064500 Sobic003G313800 Sobic003G313800 Sobic003G142300--Sobic003G313800 Sobic001G259600 Sobic001G259600 Sobic003G142300--Sobic001G259600 Sobic003G142300--Sobic008G066401 Sobic009G148100--Sobic006G190100 Sobic009G148100--Sobic010G198600 Sobic001G105900 Sobic001G105900 Sobic009G148100--Sobic001G105900 Sobic009G148100--Sobic006G190500 Sobic001G076100 Sobic001G076100 Sobic009G148100--Sobic001G076100 Sobic009G148100--Sobic001G443800 Sobic002G389000 Sobic002G389000 Sobic009G148100--Sobic002G389000 Sobic004G088300 Sobic004G088300 Sobic009G148100--Sobic004G088300 Sobic002G291900 Sobic002G291900 Sobic009G148100--Sobic002G291900 Sobic001G279300--Sobic001G280800 Sobic001G279300--Sobic010G225251 Sobic001G279300--Sobic004G336500 Sobic001G279300--Sobic009G069800 Sobic001G279300--Sobic009G145700 Sobic001G112200 Sobic001G112200 Sobic001G279300--Sobic001G112200 Sobic001G279300--Sobic010G198600 Sobic002G042000 Sobic002G042000 Sobic001G279300--Sobic002G042000 Sobic007G008100 Sobic007G008100 Sobic001G279300--Sobic007G008100 Sobic001G107800 Sobic001G107800 Sobic002G261200--Sobic001G107800 Sobic002G068600 Sobic002G068600 Sobic002G261200--Sobic002G068600 Sobic001G254100 Sobic001G254100 Sobic002G261200--Sobic001G254100 Sobic010G032100 Sobic010G032100 Sobic002G261200--Sobic010G032100 Sobic003G394400 Sobic003G394400 Sobic002G261200--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic002G261200--Sobic004G166200 Sobic002G261200--Sobic002G389000 Sobic007G214400 Sobic007G214400 Sobic002G261200--Sobic007G214400 Sobic001G149800 Sobic001G149800 Sobic002G261200--Sobic001G149800 Sobic008G139600 Sobic008G139600 Sobic006G054800--Sobic008G139600 Sobic003G043500 Sobic003G043500 Sobic006G054800--Sobic003G043500 Sobic006G054800--Sobic009G145700 Sobic007G169700 Sobic007G169700 Sobic006G054800--Sobic007G169700 Sobic004G141100 Sobic004G141100 Sobic006G054800--Sobic004G141100 Sobic009G145600 Sobic009G145600 Sobic006G054800--Sobic009G145600 Sobic006G054800--Sobic001G112200 Sobic006G054800--Sobic008G066401 Sobic006G054800--Sobic009G184000 Sobic003G362700--Sobic008G066401 Sobic003G362700--Sobic009G184000 Sobic003G362700--Sobic002G189100 Sobic003G362700--Sobic001G112200 Sobic010G209200 Sobic010G209200 Sobic003G362700--Sobic010G209200 Sobic003G362700--Sobic007G169700 Sobic003G362700--Sobic001G138600 Sobic003G362700--Sobic009G145700 Sobic003G362700--Sobic003G142300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.