Gene annotation
| Transcriptome id | Sobic.001G279300.2 |
|---|---|
| Synonym | Sb01g027480 |
| Functional annotation | Up-reguralion under heat (PubMedID : 24916767) VQ domain containing protein, putative, expressed |
| UniProt | A0A1Z5S7Y3 |
| Pfam | PF05678 |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os10g01240.1 : VQ domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a003611 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G280800 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 2 | Sobic.010G225251 | - | - |
| 3 | Sobic.004G336500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 4 | Sobic.009G069800 | Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed | K00844: hexokinase |
| 5 | Sobic.009G145700 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 7 | Sobic.010G198600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.002G042000 | gibberellin receptor GID1L2, putative, expressed | - |
| 9 | Sobic.007G008100 | invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 10 | Sobic.008G139600 | lectin-like receptor kinase, putative, expressed | - |
| 11 | Sobic.008G066401 | - | - |
| 12 | Sobic.001G138600 | VQ domain containing protein, putative, expressed | - |
| 13 | Sobic.004G169300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed | - |
| 14 | Sobic.006G054800 | "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed | - |
| 15 | Sobic.006G190100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed | - |
| 16 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 17 | Sobic.007G169700 | inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed | K01240: uridine nucleosidase |
| 18 | Sobic.009G200566 | - | - |
| 19 | Sobic.005G186100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed | - |
| 20 | Sobic.004G004400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed | K00016: LDH, L-lactate dehydrogenase |
Gene co-expression network
Octagon: transcription factors
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