Gene annotation
Transcriptome id Sobic.009G077500.2,Sobic.009G077500.3,Sobic.009G077500.1
Synonym GA2OX1, ATGA2OX1
Functional annotation gibberellin 2-beta-dioxygenase, putative, expressed
UniProt A0A1B6P7D8 , A0A1Z5R1F0 , A0A1Z5R1F3
Pfam PF03171 PF14226 PF14226 PF03171 PF03171
Panther DB PTHR10209 PTHR10209:SF106
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K04125; gibberellin 2beta-dioxygenase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G30040 : Arabidopsis thaliana gibberellin 2-oxidase 1,gibberellin 2-oxidase
RAP-DB (Rice) LOC_Os01g11150.1 : gibberellin 2-beta-dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a035886 , Zm00025a043121 , Zm00025a027518 , Zm00025a040019
Brachypodium KQK09810 , KQK03260 , KQK07053 , PNT71622 , PNT71621
Barley HORVU1Hr1G086710.1 , HORVU1Hr1G086710.3 , HORVU1Hr1G086710.2 , HORVU1Hr1G086810.2 , HORVU1Hr1G086810.1 , HORVU1Hr1G029520.8 , HORVU1Hr1G029520.7 , HORVU1Hr1G029520.6 , HORVU1Hr1G029520.3 , HORVU1Hr1G029520.2
Wheat TraesCS1A02G126400 , TraesCS1A02G392500 , TraesCS1B02G420700 , TraesCS1D02G127000 , TraesCS1B02G420800 , TraesCS1D02G400700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G313800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
2 Sobic.006G190500 expressed protein -
3 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
4 Sobic.003G142300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.004G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
6 Sobic.005G010200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
8 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
9 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
10 Sobic.009G179500 expressed protein -
11 Sobic.006G230700 wound induced protein, putative, expressed -
12 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
13 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
14 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
15 Sobic.002G174200 WRKY74, expressed -
16 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
17 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
18 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
19 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic009G077500 Sobic009G077500 Sobic003G313800 Sobic003G313800 Sobic009G077500--Sobic003G313800 Sobic006G190500 Sobic006G190500 Sobic009G077500--Sobic006G190500 Sobic006G190100 Sobic006G190100 Sobic009G077500--Sobic006G190100 Sobic003G142300 Sobic003G142300 Sobic009G077500--Sobic003G142300 Sobic004G004400 Sobic004G004400 Sobic009G077500--Sobic004G004400 Sobic005G010200 Sobic005G010200 Sobic009G077500--Sobic005G010200 Sobic001G513700 Sobic001G513700 Sobic009G077500--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic009G077500--Sobic002G036100 Sobic006G231100 Sobic006G231100 Sobic009G077500--Sobic006G231100 Sobic001G259600 Sobic001G259600 Sobic003G313800--Sobic001G259600 Sobic009G179500 Sobic009G179500 Sobic003G313800--Sobic009G179500 Sobic007G213800 Sobic007G213800 Sobic003G313800--Sobic007G213800 Sobic002G282300 Sobic002G282300 Sobic003G313800--Sobic002G282300 Sobic003G324400 Sobic003G324400 Sobic003G313800--Sobic003G324400 Sobic003G313800--Sobic002G036100 Sobic001G077400 Sobic001G077400 Sobic003G313800--Sobic001G077400 Sobic006G165100 Sobic006G165100 Sobic003G313800--Sobic006G165100 Sobic005G037000 Sobic005G037000 Sobic003G313800--Sobic005G037000 Sobic006G230800 Sobic006G230800 Sobic006G190500--Sobic006G230800 Sobic003G123600 Sobic003G123600 Sobic006G190500--Sobic003G123600 Sobic006G190500--Sobic006G190100 Sobic002G415600 Sobic002G415600 Sobic006G190500--Sobic002G415600 Sobic006G230900 Sobic006G230900 Sobic006G190500--Sobic006G230900 Sobic009G111200 Sobic009G111200 Sobic006G190500--Sobic009G111200 Sobic010G217800 Sobic010G217800 Sobic006G190500--Sobic010G217800 Sobic003G144700 Sobic003G144700 Sobic006G190500--Sobic003G144700 Sobic010G220200 Sobic010G220200 Sobic006G190500--Sobic010G220200 Sobic001G443800 Sobic001G443800 Sobic006G190100--Sobic001G443800 Sobic001G138600 Sobic001G138600 Sobic006G190100--Sobic001G138600 Sobic006G190100--Sobic006G190500 Sobic006G190100--Sobic007G213800 Sobic002G261200 Sobic002G261200 Sobic006G190100--Sobic002G261200 Sobic003G148600 Sobic003G148600 Sobic006G190100--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic006G190100--Sobic001G371800 Sobic001G391500 Sobic001G391500 Sobic006G190100--Sobic001G391500 Sobic010G198600 Sobic010G198600 Sobic006G190100--Sobic010G198600 Sobic002G189100 Sobic002G189100 Sobic003G142300--Sobic002G189100 Sobic009G192600 Sobic009G192600 Sobic003G142300--Sobic009G192600 Sobic003G362700 Sobic003G362700 Sobic003G142300--Sobic003G362700 Sobic001G259400 Sobic001G259400 Sobic003G142300--Sobic001G259400 Sobic006G101100 Sobic006G101100 Sobic003G142300--Sobic006G101100 Sobic004G064500 Sobic004G064500 Sobic003G142300--Sobic004G064500 Sobic003G142300--Sobic003G313800 Sobic003G142300--Sobic001G259600 Sobic008G066401 Sobic008G066401 Sobic003G142300--Sobic008G066401 Sobic001G280800 Sobic001G280800 Sobic004G004400--Sobic001G280800 Sobic004G004400--Sobic010G198600 Sobic004G004400--Sobic006G190100 Sobic004G004400--Sobic003G142300 Sobic009G148100 Sobic009G148100 Sobic004G004400--Sobic009G148100 Sobic001G279300 Sobic001G279300 Sobic004G004400--Sobic001G279300 Sobic004G004400--Sobic002G261200 Sobic006G054800 Sobic006G054800 Sobic004G004400--Sobic006G054800 Sobic004G004400--Sobic003G362700 Sobic005G010200--Sobic010G220200 Sobic001G483400 Sobic001G483400 Sobic005G010200--Sobic001G483400 Sobic008G177800 Sobic008G177800 Sobic005G010200--Sobic008G177800 Sobic005G010200--Sobic009G111200 Sobic005G010200--Sobic006G190500 Sobic005G010200--Sobic010G217800 Sobic005G010200--Sobic002G415600 Sobic009G066800 Sobic009G066800 Sobic005G010200--Sobic009G066800 Sobic009G129000 Sobic009G129000 Sobic005G010200--Sobic009G129000 Sobic001G513700--Sobic008G177800 Sobic007G151100 Sobic007G151100 Sobic001G513700--Sobic007G151100 Sobic001G513700--Sobic002G036100 Sobic001G516600 Sobic001G516600 Sobic001G513700--Sobic001G516600 Sobic001G532200 Sobic001G532200 Sobic001G513700--Sobic001G532200 Sobic001G513700--Sobic006G231100 Sobic002G294700 Sobic002G294700 Sobic001G513700--Sobic002G294700 Sobic007G057100 Sobic007G057100 Sobic001G513700--Sobic007G057100 Sobic006G089300 Sobic006G089300 Sobic001G513700--Sobic006G089300 Sobic002G036100--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic002G036100--Sobic004G280900 Sobic001G538866 Sobic001G538866 Sobic002G036100--Sobic001G538866 Sobic002G036100--Sobic006G165100 Sobic002G140300 Sobic002G140300 Sobic002G036100--Sobic002G140300 Sobic002G036100--Sobic001G259600 Sobic002G036100--Sobic003G313800 Sobic002G036150 Sobic002G036150 Sobic002G036100--Sobic002G036150 Sobic001G040200 Sobic001G040200 Sobic002G036100--Sobic001G040200 Sobic006G231100--Sobic008G177800 Sobic006G231100--Sobic006G230900 Sobic006G231200 Sobic006G231200 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic006G231100--Sobic002G415600 Sobic010G234600 Sobic010G234600 Sobic006G231100--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic006G231100--Sobic004G286600 Sobic006G231100--Sobic002G294700 Sobic006G231100--Sobic002G282300
Octagon: transcription factors


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