Gene annotation
Transcriptome id Sobic.010G098400.1
Synonym Sb10g008570
Functional annotation rRNA-processing protein EBP2, putative, expressed
UniProt C5Z7H8
Pfam PF05890
Panther DB PTHR13028 PTHR13028:SF0
NCBI CDD KOG3080; Nucleolar protein-like/EBNA1-binding protein
KEGG Orthology K14823; EBP2, rRNA-processing protein EBP2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22660 : rRNA processing protein-related
RAP-DB (Rice) LOC_Os07g29320.1 : rRNA-processing protein EBP2, putative, expressed
MaizeGDB (Corn) Zm00025a014617 , Zm00025a019399
Brachypodium KQK12551
Barley -
Wheat TraesCS4B02G306000 , TraesCS7D02G125500 , TraesCS4D02G304200 , TraesCS4A02G406500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G396300 PPR repeat containing protein, expressed -
2 Sobic.001G345000 OsFBX8 - F-box domain containing protein, expressed -
3 Sobic.004G241700 PPR repeat domain containing protein, putative, expressed -
4 Sobic.006G034100 methyl-CpG binding domain containing protein, expressed -
5 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
6 Sobic.001G375300 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
7 Sobic.004G237700 N-rich protein, putative, expressed -
8 Sobic.001G107900 fip1 motif family protein, expressed -
9 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.005G084400 la domain containing protein, expressed K15191: La-related protein 7
11 Sobic.007G224100 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
12 Sobic.003G144950 - -
13 Sobic.004G251300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
14 Sobic.001G081200 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
15 Sobic.006G043300 - -
16 Sobic.004G123300 oxidoreductase/ transition metal ion binding protein, putative, expressed -
17 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
18 Sobic.001G500300 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
19 Sobic.010G061100 DUF292 domain containing protein, expressed -
20 Sobic.009G125600 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4


Gene co-expression network
sample Sobic010G098400 Sobic010G098400 Sobic003G396300 Sobic003G396300 Sobic010G098400--Sobic003G396300 Sobic001G345000 Sobic001G345000 Sobic010G098400--Sobic001G345000 Sobic004G241700 Sobic004G241700 Sobic010G098400--Sobic004G241700 Sobic006G034100 Sobic006G034100 Sobic010G098400--Sobic006G034100 Sobic007G222900 Sobic007G222900 Sobic010G098400--Sobic007G222900 Sobic001G375300 Sobic001G375300 Sobic010G098400--Sobic001G375300 Sobic004G237700 Sobic004G237700 Sobic010G098400--Sobic004G237700 Sobic001G107900 Sobic001G107900 Sobic010G098400--Sobic001G107900 Sobic002G040800 Sobic002G040800 Sobic010G098400--Sobic002G040800 Sobic008G081150 Sobic008G081150 Sobic003G396300--Sobic008G081150 Sobic006G122900 Sobic006G122900 Sobic003G396300--Sobic006G122900 Sobic004G359200 Sobic004G359200 Sobic003G396300--Sobic004G359200 Sobic003G396300--Sobic010G098400 Sobic004G123300 Sobic004G123300 Sobic003G396300--Sobic004G123300 Sobic003G396300--Sobic001G345000 Sobic001G381900 Sobic001G381900 Sobic003G396300--Sobic001G381900 Sobic009G125600 Sobic009G125600 Sobic003G396300--Sobic009G125600 Sobic003G019000 Sobic003G019000 Sobic003G396300--Sobic003G019000 Sobic001G081200 Sobic001G081200 Sobic001G345000--Sobic001G081200 Sobic001G345000--Sobic009G125600 Sobic001G345000--Sobic003G396300 Sobic003G180200 Sobic003G180200 Sobic001G345000--Sobic003G180200 Sobic010G077400 Sobic010G077400 Sobic001G345000--Sobic010G077400 Sobic006G043300 Sobic006G043300 Sobic001G345000--Sobic006G043300 Sobic001G345000--Sobic010G098400 Sobic001G420400 Sobic001G420400 Sobic001G345000--Sobic001G420400 Sobic003G331300 Sobic003G331300 Sobic001G345000--Sobic003G331300 Sobic009G024300 Sobic009G024300 Sobic004G241700--Sobic009G024300 Sobic004G241700--Sobic004G123300 Sobic008G010100 Sobic008G010100 Sobic004G241700--Sobic008G010100 Sobic002G258600 Sobic002G258600 Sobic004G241700--Sobic002G258600 Sobic001G461700 Sobic001G461700 Sobic004G241700--Sobic001G461700 Sobic007G224100 Sobic007G224100 Sobic004G241700--Sobic007G224100 Sobic001G486500 Sobic001G486500 Sobic004G241700--Sobic001G486500 Sobic007G123600 Sobic007G123600 Sobic004G241700--Sobic007G123600 Sobic002G118200 Sobic002G118200 Sobic004G241700--Sobic002G118200 Sobic001G291000 Sobic001G291000 Sobic006G034100--Sobic001G291000 Sobic009G138800 Sobic009G138800 Sobic006G034100--Sobic009G138800 Sobic001G542700 Sobic001G542700 Sobic006G034100--Sobic001G542700 Sobic006G034100--Sobic001G107900 Sobic002G169633 Sobic002G169633 Sobic006G034100--Sobic002G169633 Sobic005G122700 Sobic005G122700 Sobic006G034100--Sobic005G122700 Sobic007G161000 Sobic007G161000 Sobic006G034100--Sobic007G161000 Sobic001G072500 Sobic001G072500 Sobic006G034100--Sobic001G072500 Sobic001G241200 Sobic001G241200 Sobic006G034100--Sobic001G241200 Sobic002G290300 Sobic002G290300 Sobic007G222900--Sobic002G290300 Sobic004G010101 Sobic004G010101 Sobic007G222900--Sobic004G010101 Sobic007G222900--Sobic002G040800 Sobic007G222900--Sobic008G081150 Sobic009G094800 Sobic009G094800 Sobic007G222900--Sobic009G094800 Sobic010G143200 Sobic010G143200 Sobic007G222900--Sobic010G143200 Sobic007G071000 Sobic007G071000 Sobic007G222900--Sobic007G071000 Sobic006G042200 Sobic006G042200 Sobic007G222900--Sobic006G042200 Sobic005G084400 Sobic005G084400 Sobic007G222900--Sobic005G084400 Sobic001G360900 Sobic001G360900 Sobic001G375300--Sobic001G360900 Sobic001G124000 Sobic001G124000 Sobic001G375300--Sobic001G124000 Sobic004G237100 Sobic004G237100 Sobic001G375300--Sobic004G237100 Sobic002G277600 Sobic002G277600 Sobic001G375300--Sobic002G277600 Sobic008G103200 Sobic008G103200 Sobic001G375300--Sobic008G103200 Sobic003G241800 Sobic003G241800 Sobic001G375300--Sobic003G241800 Sobic009G247400 Sobic009G247400 Sobic001G375300--Sobic009G247400 Sobic007G000100 Sobic007G000100 Sobic001G375300--Sobic007G000100 Sobic008G011100 Sobic008G011100 Sobic001G375300--Sobic008G011100 Sobic004G237700--Sobic010G098400 Sobic010G061100 Sobic010G061100 Sobic004G237700--Sobic010G061100 Sobic004G043200 Sobic004G043200 Sobic004G237700--Sobic004G043200 Sobic004G237700--Sobic006G122900 Sobic003G037900 Sobic003G037900 Sobic004G237700--Sobic003G037900 Sobic004G237700--Sobic009G125600 Sobic004G109500 Sobic004G109500 Sobic004G237700--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic004G237700--Sobic009G088401 Sobic002G140900 Sobic002G140900 Sobic004G237700--Sobic002G140900 Sobic001G107900--Sobic001G542700 Sobic004G216500 Sobic004G216500 Sobic001G107900--Sobic004G216500 Sobic001G107900--Sobic009G138800 Sobic004G065100 Sobic004G065100 Sobic001G107900--Sobic004G065100 Sobic008G192600 Sobic008G192600 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G107900--Sobic001G241200 Sobic007G117400 Sobic007G117400 Sobic001G107900--Sobic007G117400 Sobic001G107900--Sobic002G277600 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000
Octagon: transcription factors


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