Gene annotation
Transcriptome id Sobic.006G034100.2,Sobic.006G034100.1
Synonym MBD13
Functional annotation methyl-CpG binding domain containing protein, expressed
UniProt A0A1Z5RBZ6 , A0A1Z5RC27
Pfam PF01429
Panther DB PTHR34067 PTHR34067:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G52230 : methyl-CPG-binding domain protein 13
RAP-DB (Rice) LOC_Os04g19684.1 : methyl-CpG binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055771
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
3 Sobic.001G542700 expressed protein -
4 Sobic.001G107900 fip1 motif family protein, expressed -
5 Sobic.002G169633 - -
6 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
7 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
8 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.010G143800 expressed protein -
11 Sobic.004G314000 expressed protein -
12 Sobic.007G117400 expressed protein -
13 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
14 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
15 Sobic.008G016300 expressed protein -
16 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
17 Sobic.001G016600 FAR1 family protein, expressed -
18 Sobic.005G104500 phosphatidylinositol kinase, putative, expressed K00888: phosphatidylinositol 4-kinase A
19 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
20 Sobic.002G148232 - -


Gene co-expression network
sample Sobic006G034100 Sobic006G034100 Sobic001G291000 Sobic001G291000 Sobic006G034100--Sobic001G291000 Sobic009G138800 Sobic009G138800 Sobic006G034100--Sobic009G138800 Sobic001G542700 Sobic001G542700 Sobic006G034100--Sobic001G542700 Sobic001G107900 Sobic001G107900 Sobic006G034100--Sobic001G107900 Sobic002G169633 Sobic002G169633 Sobic006G034100--Sobic002G169633 Sobic005G122700 Sobic005G122700 Sobic006G034100--Sobic005G122700 Sobic007G161000 Sobic007G161000 Sobic006G034100--Sobic007G161000 Sobic001G072500 Sobic001G072500 Sobic006G034100--Sobic001G072500 Sobic001G241200 Sobic001G241200 Sobic006G034100--Sobic001G241200 Sobic001G178700 Sobic001G178700 Sobic001G291000--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G291000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G291000--Sobic009G010600 Sobic006G280200 Sobic006G280200 Sobic001G291000--Sobic006G280200 Sobic010G276900 Sobic010G276900 Sobic001G291000--Sobic010G276900 Sobic003G408600 Sobic003G408600 Sobic001G291000--Sobic003G408600 Sobic004G005100 Sobic004G005100 Sobic001G291000--Sobic004G005100 Sobic001G280900 Sobic001G280900 Sobic001G291000--Sobic001G280900 Sobic006G055200 Sobic006G055200 Sobic001G291000--Sobic006G055200 Sobic005G104500 Sobic005G104500 Sobic009G138800--Sobic005G104500 Sobic007G126600 Sobic007G126600 Sobic009G138800--Sobic007G126600 Sobic009G138800--Sobic007G161000 Sobic006G209850 Sobic006G209850 Sobic009G138800--Sobic006G209850 Sobic007G117400 Sobic007G117400 Sobic009G138800--Sobic007G117400 Sobic001G511500 Sobic001G511500 Sobic009G138800--Sobic001G511500 Sobic003G280800 Sobic003G280800 Sobic009G138800--Sobic003G280800 Sobic001G274200 Sobic001G274200 Sobic009G138800--Sobic001G274200 Sobic003G119000 Sobic003G119000 Sobic009G138800--Sobic003G119000 Sobic004G009600 Sobic004G009600 Sobic001G542700--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic001G542700--Sobic010G065300 Sobic001G542700--Sobic001G241200 Sobic002G299700 Sobic002G299700 Sobic001G542700--Sobic002G299700 Sobic001G542700--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic001G542700--Sobic003G293200 Sobic009G040600 Sobic009G040600 Sobic001G542700--Sobic009G040600 Sobic007G061700 Sobic007G061700 Sobic001G542700--Sobic007G061700 Sobic010G209400 Sobic010G209400 Sobic001G542700--Sobic010G209400 Sobic001G107900--Sobic001G542700 Sobic004G216500 Sobic004G216500 Sobic001G107900--Sobic004G216500 Sobic001G107900--Sobic009G138800 Sobic004G065100 Sobic004G065100 Sobic001G107900--Sobic004G065100 Sobic008G192600 Sobic008G192600 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G107900--Sobic001G241200 Sobic001G107900--Sobic007G117400 Sobic002G277600 Sobic002G277600 Sobic001G107900--Sobic002G277600 Sobic002G169633--Sobic001G072500 Sobic005G032800 Sobic005G032800 Sobic002G169633--Sobic005G032800 Sobic004G359800 Sobic004G359800 Sobic002G169633--Sobic004G359800 Sobic004G263600 Sobic004G263600 Sobic002G169633--Sobic004G263600 Sobic004G174200 Sobic004G174200 Sobic002G169633--Sobic004G174200 Sobic010G239600 Sobic010G239600 Sobic002G169633--Sobic010G239600 Sobic007G020500 Sobic007G020500 Sobic002G169633--Sobic007G020500 Sobic006G131500 Sobic006G131500 Sobic002G169633--Sobic006G131500 Sobic007G193700 Sobic007G193700 Sobic002G169633--Sobic007G193700 Sobic002G316600 Sobic002G316600 Sobic005G122700--Sobic002G316600 Sobic007G103100 Sobic007G103100 Sobic005G122700--Sobic007G103100 Sobic003G166750 Sobic003G166750 Sobic005G122700--Sobic003G166750 Sobic001G529600 Sobic001G529600 Sobic005G122700--Sobic001G529600 Sobic002G133300 Sobic002G133300 Sobic005G122700--Sobic002G133300 Sobic001G527800 Sobic001G527800 Sobic005G122700--Sobic001G527800 Sobic001G289800 Sobic001G289800 Sobic005G122700--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic005G122700--Sobic010G079500 Sobic001G542500 Sobic001G542500 Sobic005G122700--Sobic001G542500 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic001G072500--Sobic002G316600 Sobic001G072500--Sobic004G314000 Sobic001G072500--Sobic006G131500 Sobic010G206900 Sobic010G206900 Sobic001G072500--Sobic010G206900 Sobic001G072500--Sobic010G139000 Sobic001G241200--Sobic007G117400 Sobic005G112300 Sobic005G112300 Sobic001G241200--Sobic005G112300 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic001G241200--Sobic005G008800 Sobic008G009700 Sobic008G009700 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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