Gene annotation
Transcriptome id Sobic.004G123300.1,Sobic.004G123300.2
Synonym Sb04g010290
Functional annotation oxidoreductase/ transition metal ion binding protein, putative, expressed
UniProt C5Y000 , A0A194YP56
Pfam PF12049
Panther DB PTHR33102 PTHR33102:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29400 : Protein of unknown function (DUF3531)
RAP-DB (Rice) LOC_Os01g37820.1 : oxidoreductase/ transition metal ion binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a038350
Brachypodium KQK08324 , KQK08321 , KQK08322 , KQK08323 , PNT72196
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G027000 expressed protein -
2 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
3 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
4 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
5 Sobic.004G241700 PPR repeat domain containing protein, putative, expressed -
6 Sobic.004G119500 peptidase, putative, expressed K03100: signal peptidase I
7 Sobic.004G123600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed K18213: proteinaceous RNase P
8 Sobic.003G396300 PPR repeat containing protein, expressed -
9 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
10 Sobic.004G276500 expressed protein K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
11 Sobic.002G200200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
12 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
13 Sobic.007G224100 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
14 Sobic.009G024300 inner membrane protein alx, putative, expressed -
15 Sobic.003G211500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.001G494500 kinase, pfkB family, putative, expressed -
17 Sobic.001G486500 tRNA methyltransferase, putative, expressed K00566: mnmA, tRNA-uridine 2-sulfurtransferase
18 Sobic.001G461700 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
19 Sobic.010G061100 DUF292 domain containing protein, expressed -
20 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic004G123300 Sobic004G123300 Sobic007G027000 Sobic007G027000 Sobic004G123300--Sobic007G027000 Sobic001G381900 Sobic001G381900 Sobic004G123300--Sobic001G381900 Sobic007G123600 Sobic007G123600 Sobic004G123300--Sobic007G123600 Sobic003G019000 Sobic003G019000 Sobic004G123300--Sobic003G019000 Sobic004G241700 Sobic004G241700 Sobic004G123300--Sobic004G241700 Sobic004G119500 Sobic004G119500 Sobic004G123300--Sobic004G119500 Sobic004G123600 Sobic004G123600 Sobic004G123300--Sobic004G123600 Sobic003G396300 Sobic003G396300 Sobic004G123300--Sobic003G396300 Sobic009G137000 Sobic009G137000 Sobic004G123300--Sobic009G137000 Sobic002G156100 Sobic002G156100 Sobic007G027000--Sobic002G156100 Sobic003G162800 Sobic003G162800 Sobic007G027000--Sobic003G162800 Sobic001G445200 Sobic001G445200 Sobic007G027000--Sobic001G445200 Sobic002G409900 Sobic002G409900 Sobic007G027000--Sobic002G409900 Sobic003G345900 Sobic003G345900 Sobic007G027000--Sobic003G345900 Sobic007G027000--Sobic004G123300 Sobic001G514100 Sobic001G514100 Sobic007G027000--Sobic001G514100 Sobic002G181132 Sobic002G181132 Sobic007G027000--Sobic002G181132 Sobic005G014700 Sobic005G014700 Sobic007G027000--Sobic005G014700 Sobic004G204500 Sobic004G204500 Sobic001G381900--Sobic004G204500 Sobic001G381900--Sobic004G123600 Sobic003G211500 Sobic003G211500 Sobic001G381900--Sobic003G211500 Sobic010G268100 Sobic010G268100 Sobic001G381900--Sobic010G268100 Sobic001G381900--Sobic004G119500 Sobic001G381900--Sobic004G123300 Sobic006G248700 Sobic006G248700 Sobic001G381900--Sobic006G248700 Sobic003G132300 Sobic003G132300 Sobic001G381900--Sobic003G132300 Sobic009G237800 Sobic009G237800 Sobic001G381900--Sobic009G237800 Sobic003G151500 Sobic003G151500 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic002G043600 Sobic002G043600 Sobic007G123600--Sobic002G043600 Sobic007G123600--Sobic004G119500 Sobic002G181000 Sobic002G181000 Sobic007G123600--Sobic002G181000 Sobic002G200200 Sobic002G200200 Sobic007G123600--Sobic002G200200 Sobic003G432500 Sobic003G432500 Sobic007G123600--Sobic003G432500 Sobic001G461700 Sobic001G461700 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic001G214800 Sobic001G214800 Sobic003G019000--Sobic001G214800 Sobic003G434700 Sobic003G434700 Sobic003G019000--Sobic003G434700 Sobic009G129100 Sobic009G129100 Sobic003G019000--Sobic009G129100 Sobic001G494500 Sobic001G494500 Sobic003G019000--Sobic001G494500 Sobic003G067100 Sobic003G067100 Sobic003G019000--Sobic003G067100 Sobic003G019000--Sobic007G123600 Sobic001G354600 Sobic001G354600 Sobic003G019000--Sobic001G354600 Sobic001G375300 Sobic001G375300 Sobic003G019000--Sobic001G375300 Sobic001G022500 Sobic001G022500 Sobic003G019000--Sobic001G022500 Sobic009G024300 Sobic009G024300 Sobic004G241700--Sobic009G024300 Sobic004G241700--Sobic004G123300 Sobic008G010100 Sobic008G010100 Sobic004G241700--Sobic008G010100 Sobic002G258600 Sobic002G258600 Sobic004G241700--Sobic002G258600 Sobic004G241700--Sobic001G461700 Sobic007G224100 Sobic007G224100 Sobic004G241700--Sobic007G224100 Sobic001G486500 Sobic001G486500 Sobic004G241700--Sobic001G486500 Sobic004G241700--Sobic007G123600 Sobic002G118200 Sobic002G118200 Sobic004G241700--Sobic002G118200 Sobic006G107600 Sobic006G107600 Sobic004G119500--Sobic006G107600 Sobic002G305700 Sobic002G305700 Sobic004G119500--Sobic002G305700 Sobic003G254600 Sobic003G254600 Sobic004G119500--Sobic003G254600 Sobic004G119500--Sobic007G123600 Sobic001G281500 Sobic001G281500 Sobic004G119500--Sobic001G281500 Sobic004G119500--Sobic002G200200 Sobic009G212000 Sobic009G212000 Sobic004G119500--Sobic009G212000 Sobic003G256200 Sobic003G256200 Sobic004G119500--Sobic003G256200 Sobic007G171800 Sobic007G171800 Sobic004G119500--Sobic007G171800 Sobic004G123600--Sobic001G381900 Sobic009G157000 Sobic009G157000 Sobic004G123600--Sobic009G157000 Sobic006G111500 Sobic006G111500 Sobic004G123600--Sobic006G111500 Sobic004G123600--Sobic006G248700 Sobic004G123600--Sobic003G211500 Sobic004G123600--Sobic003G132300 Sobic004G123600--Sobic004G123300 Sobic006G122900 Sobic006G122900 Sobic004G123600--Sobic006G122900 Sobic004G132400 Sobic004G132400 Sobic004G123600--Sobic004G132400 Sobic008G081150 Sobic008G081150 Sobic003G396300--Sobic008G081150 Sobic003G396300--Sobic006G122900 Sobic004G359200 Sobic004G359200 Sobic003G396300--Sobic004G359200 Sobic010G098400 Sobic010G098400 Sobic003G396300--Sobic010G098400 Sobic003G396300--Sobic004G123300 Sobic001G345000 Sobic001G345000 Sobic003G396300--Sobic001G345000 Sobic003G396300--Sobic001G381900 Sobic009G125600 Sobic009G125600 Sobic003G396300--Sobic009G125600 Sobic003G396300--Sobic003G019000 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G233800 Sobic009G233800 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic006G110200 Sobic006G110200 Sobic009G137000--Sobic006G110200 Sobic006G237100 Sobic006G237100 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400
Octagon: transcription factors


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