Gene annotation
Transcriptome id Sobic.001G486500.2,Sobic.001G486500.3,Sobic.001G486500.1,Sobic.001G486500.4
Synonym Sb01g045520
Functional annotation tRNA methyltransferase, putative, expressed
UniProt A0A1B6QQ72 , A0A1Z5SB51 , C5WVW0
Pfam PF03054
Panther DB PTHR11933 PTHR11933:SF5
NCBI CDD KOG2805; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KEGG Orthology K00566; mnmA, tRNA-uridine 2-sulfurtransferase
Gene Ontology GO:0016740; transferase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT1G51310 : transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases
RAP-DB (Rice) LOC_Os03g07850.1 : tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a000877
Brachypodium KQK23363
Barley HORVU4Hr1G075740.1 , HORVU4Hr1G075740.3 , HORVU4Hr1G075740.2 , HORVU4Hr1G075740.5 , HORVU4Hr1G075740.4 , HORVU4Hr1G075740.7 , HORVU4Hr1G075740.6 , HORVU4Hr1G075740.9 , HORVU4Hr1G075740.8
Wheat TraesCS4A02G013400 , TraesCS4A02G013400 , TraesCS4B02G290300 , TraesCS4D02G289400
Populus -


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cDNA sequences
Sobic.001G486500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G164400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
2 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
3 Sobic.001G090500 YT521-B-like family domain containing protein, expressed -
4 Sobic.002G168300 RGH2B, putative, expressed -
5 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
6 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
7 Sobic.001G219700 pentatricopeptide, putative, expressed -
8 Sobic.003G369400 expressed protein -
9 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
10 Sobic.007G224100 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
11 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
12 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
13 Sobic.006G030400 xa21, putative, expressed -
14 Sobic.006G036566 - -
15 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
16 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
17 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
18 Sobic.001G461700 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
19 Sobic.010G100516 - -
20 Sobic.005G154900 cytokinin inducible protein, putative, expressed -


Gene co-expression network
sample Sobic001G486500 Sobic001G486500 Sobic009G164400 Sobic009G164400 Sobic001G486500--Sobic009G164400 Sobic003G381200 Sobic003G381200 Sobic001G486500--Sobic003G381200 Sobic001G090500 Sobic001G090500 Sobic001G486500--Sobic001G090500 Sobic002G168300 Sobic002G168300 Sobic001G486500--Sobic002G168300 Sobic004G263600 Sobic004G263600 Sobic001G486500--Sobic004G263600 Sobic003G434700 Sobic003G434700 Sobic001G486500--Sobic003G434700 Sobic001G219700 Sobic001G219700 Sobic001G486500--Sobic001G219700 Sobic003G369400 Sobic003G369400 Sobic001G486500--Sobic003G369400 Sobic005G014700 Sobic005G014700 Sobic001G486500--Sobic005G014700 Sobic001G327800 Sobic001G327800 Sobic009G164400--Sobic001G327800 Sobic009G164400--Sobic005G014700 Sobic002G118200 Sobic002G118200 Sobic009G164400--Sobic002G118200 Sobic005G084500 Sobic005G084500 Sobic009G164400--Sobic005G084500 Sobic004G163800 Sobic004G163800 Sobic009G164400--Sobic004G163800 Sobic007G005400 Sobic007G005400 Sobic009G164400--Sobic007G005400 Sobic002G231200 Sobic002G231200 Sobic009G164400--Sobic002G231200 Sobic005G082200 Sobic005G082200 Sobic009G164400--Sobic005G082200 Sobic003G067100 Sobic003G067100 Sobic009G164400--Sobic003G067100 Sobic003G381200--Sobic001G090500 Sobic001G159400 Sobic001G159400 Sobic003G381200--Sobic001G159400 Sobic002G276100 Sobic002G276100 Sobic003G381200--Sobic002G276100 Sobic003G381200--Sobic002G168300 Sobic001G102500 Sobic001G102500 Sobic003G381200--Sobic001G102500 Sobic007G065100 Sobic007G065100 Sobic003G381200--Sobic007G065100 Sobic008G172300 Sobic008G172300 Sobic003G381200--Sobic008G172300 Sobic003G138500 Sobic003G138500 Sobic003G381200--Sobic003G138500 Sobic004G026500 Sobic004G026500 Sobic003G381200--Sobic004G026500 Sobic001G090500--Sobic003G381200 Sobic001G090500--Sobic001G159400 Sobic003G106200 Sobic003G106200 Sobic001G090500--Sobic003G106200 Sobic007G193700 Sobic007G193700 Sobic001G090500--Sobic007G193700 Sobic001G090500--Sobic007G065100 Sobic004G035000 Sobic004G035000 Sobic001G090500--Sobic004G035000 Sobic004G317100 Sobic004G317100 Sobic001G090500--Sobic004G317100 Sobic002G169633 Sobic002G169633 Sobic001G090500--Sobic002G169633 Sobic002G031400 Sobic002G031400 Sobic001G090500--Sobic002G031400 Sobic004G248400 Sobic004G248400 Sobic002G168300--Sobic004G248400 Sobic002G168300--Sobic008G172300 Sobic002G168300--Sobic003G381200 Sobic002G168300--Sobic004G026500 Sobic002G168300--Sobic001G102500 Sobic007G023200 Sobic007G023200 Sobic002G168300--Sobic007G023200 Sobic009G014100 Sobic009G014100 Sobic002G168300--Sobic009G014100 Sobic004G333400 Sobic004G333400 Sobic002G168300--Sobic004G333400 Sobic002G168300--Sobic001G219700 Sobic004G263600--Sobic007G193700 Sobic004G174200 Sobic004G174200 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic006G233700 Sobic006G233700 Sobic001G219700--Sobic006G233700 Sobic001G219700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G219700--Sobic001G124100 Sobic003G203300 Sobic003G203300 Sobic001G219700--Sobic003G203300 Sobic008G081900 Sobic008G081900 Sobic001G219700--Sobic008G081900 Sobic002G129400 Sobic002G129400 Sobic001G219700--Sobic002G129400 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic002G349100 Sobic002G349100 Sobic001G219700--Sobic002G349100 Sobic003G369400--Sobic001G194200 Sobic003G369400--Sobic004G263600 Sobic003G369400--Sobic004G291900 Sobic007G103100 Sobic007G103100 Sobic003G369400--Sobic007G103100 Sobic003G369400--Sobic003G067100 Sobic001G289800 Sobic001G289800 Sobic003G369400--Sobic001G289800 Sobic003G355900 Sobic003G355900 Sobic003G369400--Sobic003G355900 Sobic004G238900 Sobic004G238900 Sobic003G369400--Sobic004G238900 Sobic001G002000 Sobic001G002000 Sobic003G369400--Sobic001G002000 Sobic005G014700--Sobic003G067100 Sobic005G014700--Sobic001G102500 Sobic002G043600 Sobic002G043600 Sobic005G014700--Sobic002G043600 Sobic005G014700--Sobic001G327800 Sobic010G255100 Sobic010G255100 Sobic005G014700--Sobic010G255100 Sobic005G014700--Sobic004G238900 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic001G032700 Sobic001G032700 Sobic005G014700--Sobic001G032700
Octagon: transcription factors


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