Gene annotation
Transcriptome id Sobic.004G241700.1
Synonym Sb04g028250
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A194YSH9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF187
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16010 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os02g16650.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050238 , Zm00025a042640 , Zm00025a007847
Brachypodium PNT66305 , PNT66306
Barley HORVU5Hr1G069030.17 , HORVU5Hr1G069030.16 , HORVU5Hr1G069030.15 , HORVU5Hr1G069030.14 , HORVU5Hr1G069030.10 , HORVU5Hr1G069030.13 , HORVU5Hr1G069030.11 , HORVU5Hr1G069030.19 , HORVU5Hr1G069030.18 , HORVU5Hr1G069030.24 , HORVU5Hr1G069030.25 , HORVU5Hr1G069030.22 , HORVU5Hr1G069030.23 , HORVU5Hr1G069030.20 , HORVU5Hr1G069030.21 , HORVU5Hr1G069030.7 , HORVU5Hr1G069030.6 , HORVU5Hr1G069030.12 , HORVU5Hr1G069030.1 , HORVU5Hr1G069030.9 , HORVU5Hr1G069030.8 , HORVU5Hr1G069030.5 , HORVU5Hr1G069030.4 , HORVU5Hr1G069030.3 , HORVU5Hr1G069030.2
Wheat TraesCS5A02G242200 , TraesCS5B02G240300 , TraesCS5D02G248800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G024300 inner membrane protein alx, putative, expressed -
2 Sobic.004G123300 oxidoreductase/ transition metal ion binding protein, putative, expressed -
3 Sobic.008G010100 OsFBX184 - F-box domain containing protein, expressed -
4 Sobic.002G258600 expressed protein -
5 Sobic.001G461700 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
6 Sobic.007G224100 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
7 Sobic.001G486500 tRNA methyltransferase, putative, expressed K00566: mnmA, tRNA-uridine 2-sulfurtransferase
8 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
9 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
10 Sobic.010G098400 rRNA-processing protein EBP2, putative, expressed K14823: EBP2, rRNA-processing protein EBP2
11 Sobic.001G516901 - -
12 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
13 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
14 Sobic.004G019800 MATE domain containing protein, expressed -
15 Sobic.001G345000 OsFBX8 - F-box domain containing protein, expressed -
16 Sobic.009G125600 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
17 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
18 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2
19 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
20 Sobic.008G050100 SAP domain containing protein, expressed -


Gene co-expression network
sample Sobic004G241700 Sobic004G241700 Sobic009G024300 Sobic009G024300 Sobic004G241700--Sobic009G024300 Sobic004G123300 Sobic004G123300 Sobic004G241700--Sobic004G123300 Sobic008G010100 Sobic008G010100 Sobic004G241700--Sobic008G010100 Sobic002G258600 Sobic002G258600 Sobic004G241700--Sobic002G258600 Sobic001G461700 Sobic001G461700 Sobic004G241700--Sobic001G461700 Sobic007G224100 Sobic007G224100 Sobic004G241700--Sobic007G224100 Sobic001G486500 Sobic001G486500 Sobic004G241700--Sobic001G486500 Sobic007G123600 Sobic007G123600 Sobic004G241700--Sobic007G123600 Sobic002G118200 Sobic002G118200 Sobic004G241700--Sobic002G118200 Sobic001G516901 Sobic001G516901 Sobic009G024300--Sobic001G516901 Sobic009G024300--Sobic002G258600 Sobic004G328400 Sobic004G328400 Sobic009G024300--Sobic004G328400 Sobic003G151500 Sobic003G151500 Sobic009G024300--Sobic003G151500 Sobic001G500600 Sobic001G500600 Sobic009G024300--Sobic001G500600 Sobic007G162600 Sobic007G162600 Sobic009G024300--Sobic007G162600 Sobic003G287900 Sobic003G287900 Sobic009G024300--Sobic003G287900 Sobic003G085100 Sobic003G085100 Sobic009G024300--Sobic003G085100 Sobic005G063000 Sobic005G063000 Sobic009G024300--Sobic005G063000 Sobic007G027000 Sobic007G027000 Sobic004G123300--Sobic007G027000 Sobic001G381900 Sobic001G381900 Sobic004G123300--Sobic001G381900 Sobic004G123300--Sobic007G123600 Sobic003G019000 Sobic003G019000 Sobic004G123300--Sobic003G019000 Sobic004G123300--Sobic004G241700 Sobic004G119500 Sobic004G119500 Sobic004G123300--Sobic004G119500 Sobic004G123600 Sobic004G123600 Sobic004G123300--Sobic004G123600 Sobic003G396300 Sobic003G396300 Sobic004G123300--Sobic003G396300 Sobic009G137000 Sobic009G137000 Sobic004G123300--Sobic009G137000 Sobic008G010100--Sobic004G241700 Sobic002G198200 Sobic002G198200 Sobic008G010100--Sobic002G198200 Sobic005G205200 Sobic005G205200 Sobic008G010100--Sobic005G205200 Sobic001G316700 Sobic001G316700 Sobic008G010100--Sobic001G316700 Sobic004G240500 Sobic004G240500 Sobic008G010100--Sobic004G240500 Sobic001G056900 Sobic001G056900 Sobic008G010100--Sobic001G056900 Sobic006G234601 Sobic006G234601 Sobic008G010100--Sobic006G234601 Sobic003G028800 Sobic003G028800 Sobic008G010100--Sobic003G028800 Sobic001G092200 Sobic001G092200 Sobic008G010100--Sobic001G092200 Sobic008G074000 Sobic008G074000 Sobic002G258600--Sobic008G074000 Sobic001G183000 Sobic001G183000 Sobic002G258600--Sobic001G183000 Sobic004G019800 Sobic004G019800 Sobic002G258600--Sobic004G019800 Sobic002G258600--Sobic009G024300 Sobic009G237000 Sobic009G237000 Sobic002G258600--Sobic009G237000 Sobic002G258600--Sobic002G118200 Sobic002G258600--Sobic001G516901 Sobic002G258600--Sobic007G162600 Sobic002G258600--Sobic003G287900 Sobic008G039600 Sobic008G039600 Sobic001G461700--Sobic008G039600 Sobic009G223200 Sobic009G223200 Sobic001G461700--Sobic009G223200 Sobic002G181000 Sobic002G181000 Sobic001G461700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic001G461700--Sobic002G043600 Sobic001G461700--Sobic007G123600 Sobic003G432500 Sobic003G432500 Sobic001G461700--Sobic003G432500 Sobic001G461700--Sobic009G024300 Sobic002G131700 Sobic002G131700 Sobic001G461700--Sobic002G131700 Sobic003G075100 Sobic003G075100 Sobic001G461700--Sobic003G075100 Sobic003G067100 Sobic003G067100 Sobic007G224100--Sobic003G067100 Sobic003G369400 Sobic003G369400 Sobic007G224100--Sobic003G369400 Sobic004G238900 Sobic004G238900 Sobic007G224100--Sobic004G238900 Sobic005G014700 Sobic005G014700 Sobic007G224100--Sobic005G014700 Sobic007G224100--Sobic002G043600 Sobic001G102500 Sobic001G102500 Sobic007G224100--Sobic001G102500 Sobic006G058100 Sobic006G058100 Sobic007G224100--Sobic006G058100 Sobic001G327800 Sobic001G327800 Sobic007G224100--Sobic001G327800 Sobic004G236400 Sobic004G236400 Sobic007G224100--Sobic004G236400 Sobic009G164400 Sobic009G164400 Sobic001G486500--Sobic009G164400 Sobic003G381200 Sobic003G381200 Sobic001G486500--Sobic003G381200 Sobic001G090500 Sobic001G090500 Sobic001G486500--Sobic001G090500 Sobic002G168300 Sobic002G168300 Sobic001G486500--Sobic002G168300 Sobic004G263600 Sobic004G263600 Sobic001G486500--Sobic004G263600 Sobic003G434700 Sobic003G434700 Sobic001G486500--Sobic003G434700 Sobic001G219700 Sobic001G219700 Sobic001G486500--Sobic001G219700 Sobic001G486500--Sobic003G369400 Sobic001G486500--Sobic005G014700 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic007G123600--Sobic002G043600 Sobic007G123600--Sobic004G119500 Sobic007G123600--Sobic002G181000 Sobic002G200200 Sobic002G200200 Sobic007G123600--Sobic002G200200 Sobic007G123600--Sobic003G432500 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic002G118200--Sobic003G085100 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic002G118200--Sobic008G074000
Octagon: transcription factors


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