Gene annotation
Transcriptome id Sobic.001G284100.3,Sobic.001G284100.1
Synonym Sb01g027920, SRO1
Functional annotation RCD1, putative, expressed
UniProt A0A1B6QLL7
Pfam PF00644 PF12174
Panther DB PTHR32263 PTHR32263:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003950; NAD+ ADP-ribosyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G32230 : WWE protein-protein interaction domain protein family
RAP-DB (Rice) LOC_Os10g42710.1 : RCD1, putative, expressed
MaizeGDB (Corn) Zm00025a018079 , Zm00025a003538
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G284100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G168000 OsFBD13 - F-box and FBD domain containing protein, expressed -
2 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.001G017900 FAD binding protein, putative, expressed -
4 Sobic.005G154900 cytokinin inducible protein, putative, expressed -
5 Sobic.003G336200 expressed protein -
6 Sobic.003G264700 expressed protein -
7 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
8 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G440400 ABC transporter, ATP-binding protein, putative, expressed -
10 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
11 Sobic.006G248700 AAA-type ATPase family protein, putative, expressed -
12 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
13 Sobic.005G195000 RGH1A, putative, expressed -
14 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.001G316700 amine oxidase, putative, expressed -
16 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
17 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
18 Sobic.001G167100 Ca ATPase 2(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
19 Sobic.005G143200 ribosomal protein S7, putative, expressed K13173: arginine and glutamate-rich protein 1
20 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23


Gene co-expression network
sample Sobic001G284100 Sobic001G284100 Sobic001G168000 Sobic001G168000 Sobic001G284100--Sobic001G168000 Sobic009G255300 Sobic009G255300 Sobic001G284100--Sobic009G255300 Sobic001G017900 Sobic001G017900 Sobic001G284100--Sobic001G017900 Sobic005G154900 Sobic005G154900 Sobic001G284100--Sobic005G154900 Sobic003G336200 Sobic003G336200 Sobic001G284100--Sobic003G336200 Sobic003G264700 Sobic003G264700 Sobic001G284100--Sobic003G264700 Sobic008G163700 Sobic008G163700 Sobic001G284100--Sobic008G163700 Sobic010G036000 Sobic010G036000 Sobic001G284100--Sobic010G036000 Sobic003G440400 Sobic003G440400 Sobic001G284100--Sobic003G440400 Sobic001G168000--Sobic001G284100 Sobic005G169800 Sobic005G169800 Sobic001G168000--Sobic005G169800 Sobic001G168000--Sobic003G336200 Sobic001G168000--Sobic009G255300 Sobic005G195000 Sobic005G195000 Sobic001G168000--Sobic005G195000 Sobic009G143900 Sobic009G143900 Sobic001G168000--Sobic009G143900 Sobic003G249400 Sobic003G249400 Sobic001G168000--Sobic003G249400 Sobic001G168000--Sobic001G017900 Sobic003G161200 Sobic003G161200 Sobic001G168000--Sobic003G161200 Sobic003G179100 Sobic003G179100 Sobic009G255300--Sobic003G179100 Sobic007G013500 Sobic007G013500 Sobic009G255300--Sobic007G013500 Sobic006G278500 Sobic006G278500 Sobic009G255300--Sobic006G278500 Sobic009G255300--Sobic010G036000 Sobic002G285300 Sobic002G285300 Sobic009G255300--Sobic002G285300 Sobic004G072000 Sobic004G072000 Sobic009G255300--Sobic004G072000 Sobic010G073300 Sobic010G073300 Sobic009G255300--Sobic010G073300 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900 Sobic006G192400 Sobic006G192400 Sobic001G017900--Sobic006G192400 Sobic001G017900--Sobic002G285300 Sobic001G017900--Sobic008G163700 Sobic007G156101 Sobic007G156101 Sobic001G017900--Sobic007G156101 Sobic003G267900 Sobic003G267900 Sobic001G017900--Sobic003G267900 Sobic006G157300 Sobic006G157300 Sobic001G017900--Sobic006G157300 Sobic004G284400 Sobic004G284400 Sobic001G017900--Sobic004G284400 Sobic001G017900--Sobic009G255300 Sobic001G017900--Sobic010G036000 Sobic010G121500 Sobic010G121500 Sobic005G154900--Sobic010G121500 Sobic005G090401 Sobic005G090401 Sobic005G154900--Sobic005G090401 Sobic001G474600 Sobic001G474600 Sobic005G154900--Sobic001G474600 Sobic003G252200 Sobic003G252200 Sobic005G154900--Sobic003G252200 Sobic002G173000 Sobic002G173000 Sobic005G154900--Sobic002G173000 Sobic003G241800 Sobic003G241800 Sobic005G154900--Sobic003G241800 Sobic009G161550 Sobic009G161550 Sobic005G154900--Sobic009G161550 Sobic008G027000 Sobic008G027000 Sobic005G154900--Sobic008G027000 Sobic005G032800 Sobic005G032800 Sobic005G154900--Sobic005G032800 Sobic010G244600 Sobic010G244600 Sobic003G336200--Sobic010G244600 Sobic003G336200--Sobic004G072000 Sobic001G543500 Sobic001G543500 Sobic003G336200--Sobic001G543500 Sobic002G088200 Sobic002G088200 Sobic003G336200--Sobic002G088200 Sobic003G107100 Sobic003G107100 Sobic003G336200--Sobic003G107100 Sobic003G336200--Sobic009G255300 Sobic003G336200--Sobic005G169800 Sobic004G034500 Sobic004G034500 Sobic003G336200--Sobic004G034500 Sobic007G204400 Sobic007G204400 Sobic003G336200--Sobic007G204400 Sobic004G023400 Sobic004G023400 Sobic003G264700--Sobic004G023400 Sobic004G204500 Sobic004G204500 Sobic003G264700--Sobic004G204500 Sobic003G264700--Sobic007G204400 Sobic003G264700--Sobic002G088200 Sobic003G309700 Sobic003G309700 Sobic003G264700--Sobic003G309700 Sobic009G237800 Sobic009G237800 Sobic003G264700--Sobic009G237800 Sobic010G042400 Sobic010G042400 Sobic003G264700--Sobic010G042400 Sobic001G381900 Sobic001G381900 Sobic003G264700--Sobic001G381900 Sobic003G264700--Sobic001G543500 Sobic008G163700--Sobic001G017900 Sobic008G163700--Sobic002G285300 Sobic007G159800 Sobic007G159800 Sobic008G163700--Sobic007G159800 Sobic008G163700--Sobic007G156101 Sobic001G038500 Sobic001G038500 Sobic008G163700--Sobic001G038500 Sobic008G163700--Sobic009G255300 Sobic010G092100 Sobic010G092100 Sobic008G163700--Sobic010G092100 Sobic007G017400 Sobic007G017400 Sobic008G163700--Sobic007G017400 Sobic001G361900 Sobic001G361900 Sobic008G163700--Sobic001G361900 Sobic010G036000--Sobic003G179100 Sobic002G284901 Sobic002G284901 Sobic010G036000--Sobic002G284901 Sobic010G036000--Sobic010G073300 Sobic001G525000 Sobic001G525000 Sobic010G036000--Sobic001G525000 Sobic002G430200 Sobic002G430200 Sobic010G036000--Sobic002G430200 Sobic003G120400 Sobic003G120400 Sobic010G036000--Sobic003G120400 Sobic002G387100 Sobic002G387100 Sobic010G036000--Sobic002G387100 Sobic002G320900 Sobic002G320900 Sobic010G036000--Sobic002G320900 Sobic006G065700 Sobic006G065700 Sobic010G036000--Sobic006G065700 Sobic004G008000 Sobic004G008000 Sobic003G440400--Sobic004G008000 Sobic003G440400--Sobic003G179100 Sobic008G131800 Sobic008G131800 Sobic003G440400--Sobic008G131800 Sobic003G440400--Sobic002G430200 Sobic004G239000 Sobic004G239000 Sobic003G440400--Sobic004G239000 Sobic004G330400 Sobic004G330400 Sobic003G440400--Sobic004G330400 Sobic007G111600 Sobic007G111600 Sobic003G440400--Sobic007G111600 Sobic002G284800 Sobic002G284800 Sobic003G440400--Sobic002G284800 Sobic003G440400--Sobic002G387100
Octagon: transcription factors


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