Gene annotation
Transcriptome id Sobic.003G440400.1
Synonym Sb03g047010, AtABCD1, ACN2, PED3, CTS, PXA1
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5XJA4
Pfam PF00005 PF06472
Panther DB PTHR11384 PTHR11384:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT4G39850 : peroxisomal ABC transporter 1
RAP-DB (Rice) LOC_Os01g73530.2 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a038285 , Zm00025a025864
Brachypodium KQK08074 , KQK08073 , KQK11705 , KQK11706
Barley HORVU3Hr1G113060.14 , HORVU3Hr1G113060.12 , HORVU3Hr1G113060.13 , HORVU3Hr1G113060.10 , HORVU3Hr1G113060.11 , HORVU1Hr1G003300.20 , HORVU1Hr1G003300.15 , HORVU1Hr1G003300.14 , HORVU1Hr1G003300.17 , HORVU1Hr1G003300.16 , HORVU1Hr1G003300.11 , HORVU1Hr1G003300.10 , HORVU1Hr1G003300.13 , HORVU1Hr1G003300.12 , HORVU1Hr1G003300.19 , HORVU1Hr1G003300.18 , HORVU3Hr1G113060.2 , HORVU3Hr1G113060.3 , HORVU3Hr1G113060.8 , HORVU3Hr1G113060.9 , HORVU3Hr1G113060.4 , HORVU3Hr1G113060.5 , HORVU3Hr1G113060.6 , HORVU3Hr1G113060.7 , HORVU3Hr1G113060.1 , HORVU1Hr1G003300.1 , HORVU1Hr1G003300.3 , HORVU1Hr1G003300.2 , HORVU1Hr1G003300.5 , HORVU1Hr1G003300.4 , HORVU1Hr1G003300.7 , HORVU1Hr1G003300.6 , HORVU1Hr1G003300.9 , HORVU1Hr1G003300.8
Wheat TraesCS3D02G253800 , TraesCSU02G053600 , TraesCSU02G053600 , TraesCS3A02G516400 , TraesCS3A02G255900 , TraesCS1B02G030800 , TraesCS3D02G524100 , TraesCS3D02G524100 , TraesCS1B02G030800 , TraesCS1D02G024400 , TraesCS1D02G024400 , TraesCS3B02G288600 , TraesCS3B02G288600 , TraesCS3A02G516400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G008000 matrix attachment region binding protein, putative, expressed K14565: nucleolar protein 58
2 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
3 Sobic.008G131800 zinc knuckle family protein, expressed -
4 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
5 Sobic.004G239000 - -
6 Sobic.004G330400 expressed protein -
7 Sobic.007G111600 WRKY89, expressed -
8 Sobic.002G284800 expressed protein -
9 Sobic.002G387100 X8 domain containing protein, expressed -
10 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
11 Sobic.001G460800 nucleotidyltransferase, putative, expressed -
12 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
13 Sobic.007G122300 - -
14 Sobic.003G368150 - -
15 Sobic.010G179150 - -
16 Sobic.001G525000 polygalacturonase, putative, expressed -
17 Sobic.001G120100 DUF1295 domain containing protein, putative, expressed -
18 Sobic.001G255700 - -
19 Sobic.001G213400 HD domain containing protein 2, putative, expressed K06950: uncharacterized protein
20 Sobic.007G116600 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed -


Gene co-expression network
sample Sobic003G440400 Sobic003G440400 Sobic004G008000 Sobic004G008000 Sobic003G440400--Sobic004G008000 Sobic003G179100 Sobic003G179100 Sobic003G440400--Sobic003G179100 Sobic008G131800 Sobic008G131800 Sobic003G440400--Sobic008G131800 Sobic002G430200 Sobic002G430200 Sobic003G440400--Sobic002G430200 Sobic004G239000 Sobic004G239000 Sobic003G440400--Sobic004G239000 Sobic004G330400 Sobic004G330400 Sobic003G440400--Sobic004G330400 Sobic007G111600 Sobic007G111600 Sobic003G440400--Sobic007G111600 Sobic002G284800 Sobic002G284800 Sobic003G440400--Sobic002G284800 Sobic002G387100 Sobic002G387100 Sobic003G440400--Sobic002G387100 Sobic001G120100 Sobic001G120100 Sobic004G008000--Sobic001G120100 Sobic002G231800 Sobic002G231800 Sobic004G008000--Sobic002G231800 Sobic001G537900 Sobic001G537900 Sobic004G008000--Sobic001G537900 Sobic007G161450 Sobic007G161450 Sobic004G008000--Sobic007G161450 Sobic008G020300 Sobic008G020300 Sobic004G008000--Sobic008G020300 Sobic003G008850 Sobic003G008850 Sobic004G008000--Sobic003G008850 Sobic004G008000--Sobic007G111600 Sobic004G354800 Sobic004G354800 Sobic004G008000--Sobic004G354800 Sobic010G179150 Sobic010G179150 Sobic004G008000--Sobic010G179150 Sobic010G073300 Sobic010G073300 Sobic003G179100--Sobic010G073300 Sobic002G284901 Sobic002G284901 Sobic003G179100--Sobic002G284901 Sobic002G320900 Sobic002G320900 Sobic003G179100--Sobic002G320900 Sobic003G120400 Sobic003G120400 Sobic003G179100--Sobic003G120400 Sobic001G525000 Sobic001G525000 Sobic003G179100--Sobic001G525000 Sobic006G065700 Sobic006G065700 Sobic003G179100--Sobic006G065700 Sobic003G179100--Sobic002G430200 Sobic003G179100--Sobic002G387100 Sobic001G519300 Sobic001G519300 Sobic003G179100--Sobic001G519300 Sobic008G131800--Sobic004G239000 Sobic008G131800--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic008G131800--Sobic001G255700 Sobic003G368150 Sobic003G368150 Sobic008G131800--Sobic003G368150 Sobic008G131800--Sobic007G111600 Sobic008G131800--Sobic010G179150 Sobic007G122300 Sobic007G122300 Sobic008G131800--Sobic007G122300 Sobic003G099500 Sobic003G099500 Sobic008G131800--Sobic003G099500 Sobic001G016900 Sobic001G016900 Sobic008G131800--Sobic001G016900 Sobic002G430200--Sobic002G387100 Sobic002G430200--Sobic007G122300 Sobic002G430200--Sobic003G099500 Sobic003G367401 Sobic003G367401 Sobic002G430200--Sobic003G367401 Sobic002G430200--Sobic001G525000 Sobic002G430200--Sobic004G239000 Sobic002G430200--Sobic003G120400 Sobic010G201000 Sobic010G201000 Sobic002G430200--Sobic010G201000 Sobic002G430200--Sobic002G284800 Sobic004G239000--Sobic003G099500 Sobic004G239000--Sobic008G131800 Sobic004G239000--Sobic002G284800 Sobic004G239000--Sobic002G430200 Sobic004G239000--Sobic001G016900 Sobic004G239000--Sobic003G368150 Sobic004G239000--Sobic001G255700 Sobic004G239000--Sobic002G387100 Sobic004G239000--Sobic007G122300 Sobic004G330400--Sobic002G284800 Sobic004G330400--Sobic001G255700 Sobic003G105300 Sobic003G105300 Sobic004G330400--Sobic003G105300 Sobic004G330400--Sobic003G368150 Sobic008G133100 Sobic008G133100 Sobic004G330400--Sobic008G133100 Sobic002G425900 Sobic002G425900 Sobic004G330400--Sobic002G425900 Sobic010G224800 Sobic010G224800 Sobic004G330400--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic004G330400--Sobic003G109400 Sobic009G163500 Sobic009G163500 Sobic004G330400--Sobic009G163500 Sobic007G111600--Sobic008G131800 Sobic007G111600--Sobic010G179150 Sobic004G251350 Sobic004G251350 Sobic007G111600--Sobic004G251350 Sobic007G204500 Sobic007G204500 Sobic007G111600--Sobic007G204500 Sobic007G116600 Sobic007G116600 Sobic007G111600--Sobic007G116600 Sobic007G111600--Sobic004G239000 Sobic007G111600--Sobic003G099500 Sobic007G111600--Sobic001G016900 Sobic007G013100 Sobic007G013100 Sobic007G111600--Sobic007G013100 Sobic002G284800--Sobic003G368150 Sobic002G284800--Sobic001G255700 Sobic002G284800--Sobic004G239000 Sobic002G284800--Sobic008G131800 Sobic002G284800--Sobic008G133100 Sobic002G284800--Sobic003G099500 Sobic002G284800--Sobic002G387100 Sobic002G284800--Sobic007G122300 Sobic002G284800--Sobic003G105300 Sobic002G387100--Sobic002G430200 Sobic002G387100--Sobic007G122300 Sobic002G387100--Sobic003G099500 Sobic002G387100--Sobic004G239000 Sobic002G387100--Sobic001G525000 Sobic002G387100--Sobic003G367401 Sobic002G387100--Sobic002G284800 Sobic002G387100--Sobic003G368150 Sobic002G387100--Sobic003G120400
Octagon: transcription factors


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