Gene annotation
Transcriptome id Sobic.005G143200.2
Synonym Sb05g020840
Functional annotation ribosomal protein S7, putative, expressed
UniProt A0A1Z5RJS5
Pfam PF15346
Panther DB PTHR31711
NCBI CDD -
KEGG Orthology K13173; arginine and glutamate-rich protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10890 : -
RAP-DB (Rice) LOC_Os11g34150.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a033543 , Zm00025a015718
Brachypodium KQJ88296
Barley HORVU6Hr1G088630.3 , HORVU6Hr1G088630.2 , HORVU6Hr1G088630.1 , HORVU6Hr1G088630.7 , HORVU6Hr1G088630.6 , HORVU6Hr1G088630.5 , HORVU6Hr1G088630.4 , HORVU6Hr1G088630.9 , HORVU6Hr1G088630.8 , HORVU6Hr1G088630.10
Wheat TraesCS6A02G375600 , TraesCS6B02G413200 , TraesCS6B02G413200 , TraesCS6D02G360500 , TraesCS6D02G360500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G052600 OsWAK32 - OsWAK receptor-like protein kinase, expressed -
2 Sobic.001G284100 RCD1, putative, expressed -
3 Sobic.003G403900 "domain confirmed by Pfam database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
4 Sobic.005G195000 RGH1A, putative, expressed -
5 Sobic.001G168000 OsFBD13 - F-box and FBD domain containing protein, expressed -
6 Sobic.001G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine protease 1 precursor, putative, expressed -
7 Sobic.005G154900 cytokinin inducible protein, putative, expressed -
8 Sobic.006G243800 OsWAK55 - OsWAK receptor-like protein kinase, expressed -
9 Sobic.002G005800 protein kinase domain containing protein, expressed -
10 Sobic.005G224800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G165700 expressed protein -
12 Sobic.010G121500 expressed protein K11267: sister chromatid cohesion protein PDS5
13 Sobic.001G184900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"Expressed protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659837)@expressed protein -
14 Sobic.009G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
15 Sobic.006G151200 expressed protein -
16 Sobic.004G328000 snf1-related kinase interactor 2, putative, expressed -
17 Sobic.009G147300 expressed protein -
18 Sobic.003G061200 5-nucleotidase domain-containing protein, putative, expressed -
19 Sobic.001G489900 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@expressed protein -
20 Sobic.003G413201 - -


Gene co-expression network
sample Sobic005G143200 Sobic005G143200 Sobic008G052600 Sobic008G052600 Sobic005G143200--Sobic008G052600 Sobic001G284100 Sobic001G284100 Sobic005G143200--Sobic001G284100 Sobic003G403900 Sobic003G403900 Sobic005G143200--Sobic003G403900 Sobic005G195000 Sobic005G195000 Sobic005G143200--Sobic005G195000 Sobic001G168000 Sobic001G168000 Sobic005G143200--Sobic001G168000 Sobic001G086800 Sobic001G086800 Sobic005G143200--Sobic001G086800 Sobic005G154900 Sobic005G154900 Sobic005G143200--Sobic005G154900 Sobic006G243800 Sobic006G243800 Sobic005G143200--Sobic006G243800 Sobic002G005800 Sobic002G005800 Sobic005G143200--Sobic002G005800 Sobic001G167100 Sobic001G167100 Sobic008G052600--Sobic001G167100 Sobic008G052600--Sobic005G143200 Sobic008G052600--Sobic003G403900 Sobic005G093800 Sobic005G093800 Sobic008G052600--Sobic005G093800 Sobic004G165700 Sobic004G165700 Sobic008G052600--Sobic004G165700 Sobic003G190100 Sobic003G190100 Sobic008G052600--Sobic003G190100 Sobic008G052600--Sobic006G243800 Sobic003G160100 Sobic003G160100 Sobic008G052600--Sobic003G160100 Sobic005G182400 Sobic005G182400 Sobic008G052600--Sobic005G182400 Sobic001G284100--Sobic001G168000 Sobic009G255300 Sobic009G255300 Sobic001G284100--Sobic009G255300 Sobic001G017900 Sobic001G017900 Sobic001G284100--Sobic001G017900 Sobic001G284100--Sobic005G154900 Sobic003G336200 Sobic003G336200 Sobic001G284100--Sobic003G336200 Sobic003G264700 Sobic003G264700 Sobic001G284100--Sobic003G264700 Sobic008G163700 Sobic008G163700 Sobic001G284100--Sobic008G163700 Sobic010G036000 Sobic010G036000 Sobic001G284100--Sobic010G036000 Sobic003G440400 Sobic003G440400 Sobic001G284100--Sobic003G440400 Sobic006G158700 Sobic006G158700 Sobic003G403900--Sobic006G158700 Sobic009G133700 Sobic009G133700 Sobic003G403900--Sobic009G133700 Sobic009G250400 Sobic009G250400 Sobic003G403900--Sobic009G250400 Sobic007G157300 Sobic007G157300 Sobic003G403900--Sobic007G157300 Sobic003G094100 Sobic003G094100 Sobic003G403900--Sobic003G094100 Sobic003G403900--Sobic004G165700 Sobic001G180200 Sobic001G180200 Sobic003G403900--Sobic001G180200 Sobic009G004100 Sobic009G004100 Sobic003G403900--Sobic009G004100 Sobic007G135800 Sobic007G135800 Sobic003G403900--Sobic007G135800 Sobic006G136900 Sobic006G136900 Sobic005G195000--Sobic006G136900 Sobic002G068500 Sobic002G068500 Sobic005G195000--Sobic002G068500 Sobic004G327500 Sobic004G327500 Sobic005G195000--Sobic004G327500 Sobic004G225450 Sobic004G225450 Sobic005G195000--Sobic004G225450 Sobic008G190700 Sobic008G190700 Sobic005G195000--Sobic008G190700 Sobic009G225300 Sobic009G225300 Sobic005G195000--Sobic009G225300 Sobic005G195000--Sobic010G036000 Sobic003G179100 Sobic003G179100 Sobic005G195000--Sobic003G179100 Sobic009G083100 Sobic009G083100 Sobic005G195000--Sobic009G083100 Sobic001G168000--Sobic001G284100 Sobic005G169800 Sobic005G169800 Sobic001G168000--Sobic005G169800 Sobic001G168000--Sobic003G336200 Sobic001G168000--Sobic009G255300 Sobic001G168000--Sobic005G195000 Sobic009G143900 Sobic009G143900 Sobic001G168000--Sobic009G143900 Sobic003G249400 Sobic003G249400 Sobic001G168000--Sobic003G249400 Sobic001G168000--Sobic001G017900 Sobic003G161200 Sobic003G161200 Sobic001G168000--Sobic003G161200 Sobic009G147300 Sobic009G147300 Sobic001G086800--Sobic009G147300 Sobic001G413000 Sobic001G413000 Sobic001G086800--Sobic001G413000 Sobic002G390500 Sobic002G390500 Sobic001G086800--Sobic002G390500 Sobic006G259600 Sobic006G259600 Sobic001G086800--Sobic006G259600 Sobic002G136100 Sobic002G136100 Sobic001G086800--Sobic002G136100 Sobic002G072100 Sobic002G072100 Sobic001G086800--Sobic002G072100 Sobic001G086800--Sobic006G243800 Sobic005G179300 Sobic005G179300 Sobic001G086800--Sobic005G179300 Sobic008G060000 Sobic008G060000 Sobic001G086800--Sobic008G060000 Sobic010G121500 Sobic010G121500 Sobic005G154900--Sobic010G121500 Sobic005G090401 Sobic005G090401 Sobic005G154900--Sobic005G090401 Sobic001G474600 Sobic001G474600 Sobic005G154900--Sobic001G474600 Sobic003G252200 Sobic003G252200 Sobic005G154900--Sobic003G252200 Sobic002G173000 Sobic002G173000 Sobic005G154900--Sobic002G173000 Sobic003G241800 Sobic003G241800 Sobic005G154900--Sobic003G241800 Sobic009G161550 Sobic009G161550 Sobic005G154900--Sobic009G161550 Sobic008G027000 Sobic008G027000 Sobic005G154900--Sobic008G027000 Sobic005G032800 Sobic005G032800 Sobic005G154900--Sobic005G032800 Sobic006G243800--Sobic005G179300 Sobic006G212800 Sobic006G212800 Sobic006G243800--Sobic006G212800 Sobic004G271600 Sobic004G271600 Sobic006G243800--Sobic004G271600 Sobic001G470300 Sobic001G470300 Sobic006G243800--Sobic001G470300 Sobic006G243800--Sobic001G180200 Sobic006G235400 Sobic006G235400 Sobic006G243800--Sobic006G235400 Sobic006G090100 Sobic006G090100 Sobic006G243800--Sobic006G090100 Sobic006G243800--Sobic006G259600 Sobic009G207900 Sobic009G207900 Sobic006G243800--Sobic009G207900 Sobic002G115050 Sobic002G115050 Sobic002G005800--Sobic002G115050 Sobic005G075100 Sobic005G075100 Sobic002G005800--Sobic005G075100 Sobic005G224800 Sobic005G224800 Sobic002G005800--Sobic005G224800 Sobic007G106800 Sobic007G106800 Sobic002G005800--Sobic007G106800 Sobic006G133900 Sobic006G133900 Sobic002G005800--Sobic006G133900 Sobic002G124600 Sobic002G124600 Sobic002G005800--Sobic002G124600 Sobic002G345700 Sobic002G345700 Sobic002G005800--Sobic002G345700 Sobic004G181600 Sobic004G181600 Sobic002G005800--Sobic004G181600 Sobic007G167100 Sobic007G167100 Sobic002G005800--Sobic007G167100
Octagon: transcription factors


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