Gene annotation
Transcriptome id Sobic.001G086800.1
Synonym Sb01g007820, SAG12
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cysteine protease 1 precursor, putative, expressed
UniProt C5X096
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF398
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os03g54130.1 : cysteine protease 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016788
Brachypodium KQK13152
Barley HORVU5Hr1G095580.3 , HORVU6Hr1G031190.1 , HORVU5Hr1G095580.1 , HORVU5Hr1G095580.4 , HORVU5Hr1G095580.2
Wheat TraesCS5D02G401300 , TraesCS5A02G391500
Populus -


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cDNA sequences
Sobic.001G086800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G147300 expressed protein -
2 Sobic.001G413000 ABC transporter family protein, putative, expressed -
3 Sobic.002G390500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pyruvate dehydrogenase kinase(PubMedID : 27016024)@kinase, putative, expressed K00898: pyruvate dehydrogenase kinase 2/3/4
4 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
5 Sobic.002G136100 genetic modifier, putative, expressed -
6 Sobic.002G072100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G243800 OsWAK55 - OsWAK receptor-like protein kinase, expressed -
8 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.008G060000 receptor-like protein kinase 2 precursor, putative, expressed -
10 Sobic.003G397600 expressed protein -
11 Sobic.006G212800 expressed protein -
12 Sobic.010G181100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD binding domain containing protein, expressed -
13 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
14 Sobic.002G412100 flowering promoting factor-like 1, putative, expressed -
15 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
16 Sobic.001G314400 OsMADS56 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.002G201900 transporter family protein, putative, expressed -
18 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
19 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
20 Sobic.003G026600 osFTL8 FT-Like8 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T


Gene co-expression network
sample Sobic001G086800 Sobic001G086800 Sobic009G147300 Sobic009G147300 Sobic001G086800--Sobic009G147300 Sobic001G413000 Sobic001G413000 Sobic001G086800--Sobic001G413000 Sobic002G390500 Sobic002G390500 Sobic001G086800--Sobic002G390500 Sobic006G259600 Sobic006G259600 Sobic001G086800--Sobic006G259600 Sobic002G136100 Sobic002G136100 Sobic001G086800--Sobic002G136100 Sobic002G072100 Sobic002G072100 Sobic001G086800--Sobic002G072100 Sobic006G243800 Sobic006G243800 Sobic001G086800--Sobic006G243800 Sobic005G179300 Sobic005G179300 Sobic001G086800--Sobic005G179300 Sobic008G060000 Sobic008G060000 Sobic001G086800--Sobic008G060000 Sobic009G147300--Sobic001G086800 Sobic009G147300--Sobic001G413000 Sobic007G169300 Sobic007G169300 Sobic009G147300--Sobic007G169300 Sobic003G080700 Sobic003G080700 Sobic009G147300--Sobic003G080700 Sobic003G190100 Sobic003G190100 Sobic009G147300--Sobic003G190100 Sobic005G149200 Sobic005G149200 Sobic009G147300--Sobic005G149200 Sobic009G147300--Sobic002G390500 Sobic009G147300--Sobic006G243800 Sobic001G517800 Sobic001G517800 Sobic009G147300--Sobic001G517800 Sobic002G173100 Sobic002G173100 Sobic001G413000--Sobic002G173100 Sobic001G413000--Sobic006G259600 Sobic001G243200 Sobic001G243200 Sobic001G413000--Sobic001G243200 Sobic007G090403 Sobic007G090403 Sobic001G413000--Sobic007G090403 Sobic001G413000--Sobic003G080700 Sobic001G413000--Sobic005G179300 Sobic009G082000 Sobic009G082000 Sobic001G413000--Sobic009G082000 Sobic003G160100 Sobic003G160100 Sobic001G413000--Sobic003G160100 Sobic009G219100 Sobic009G219100 Sobic001G413000--Sobic009G219100 Sobic002G412100 Sobic002G412100 Sobic002G390500--Sobic002G412100 Sobic002G390500--Sobic009G219100 Sobic002G390500--Sobic005G179300 Sobic003G343500 Sobic003G343500 Sobic002G390500--Sobic003G343500 Sobic001G333800 Sobic001G333800 Sobic002G390500--Sobic001G333800 Sobic010G181100 Sobic010G181100 Sobic002G390500--Sobic010G181100 Sobic002G390500--Sobic006G259600 Sobic002G390500--Sobic003G080700 Sobic001G003200 Sobic001G003200 Sobic002G390500--Sobic001G003200 Sobic006G090100 Sobic006G090100 Sobic006G259600--Sobic006G090100 Sobic001G207800 Sobic001G207800 Sobic006G259600--Sobic001G207800 Sobic003G166200 Sobic003G166200 Sobic006G259600--Sobic003G166200 Sobic002G081400 Sobic002G081400 Sobic006G259600--Sobic002G081400 Sobic006G212800 Sobic006G212800 Sobic006G259600--Sobic006G212800 Sobic009G073900 Sobic009G073900 Sobic006G259600--Sobic009G073900 Sobic001G509200 Sobic001G509200 Sobic006G259600--Sobic001G509200 Sobic006G259600--Sobic001G243200 Sobic001G077300 Sobic001G077300 Sobic006G259600--Sobic001G077300 Sobic004G154400 Sobic004G154400 Sobic002G136100--Sobic004G154400 Sobic002G136100--Sobic006G212800 Sobic009G207900 Sobic009G207900 Sobic002G136100--Sobic009G207900 Sobic010G058200 Sobic010G058200 Sobic002G136100--Sobic010G058200 Sobic001G286600 Sobic001G286600 Sobic002G136100--Sobic001G286600 Sobic003G328100 Sobic003G328100 Sobic002G136100--Sobic003G328100 Sobic009G062400 Sobic009G062400 Sobic002G136100--Sobic009G062400 Sobic003G157900 Sobic003G157900 Sobic002G136100--Sobic003G157900 Sobic007G015500 Sobic007G015500 Sobic002G136100--Sobic007G015500 Sobic001G029200 Sobic001G029200 Sobic002G072100--Sobic001G029200 Sobic002G072100--Sobic001G413000 Sobic010G035500 Sobic010G035500 Sobic002G072100--Sobic010G035500 Sobic010G272800 Sobic010G272800 Sobic002G072100--Sobic010G272800 Sobic002G072100--Sobic006G259600 Sobic008G081900 Sobic008G081900 Sobic002G072100--Sobic008G081900 Sobic008G027200 Sobic008G027200 Sobic002G072100--Sobic008G027200 Sobic002G072100--Sobic001G086800 Sobic003G129600 Sobic003G129600 Sobic002G072100--Sobic003G129600 Sobic006G243800--Sobic005G179300 Sobic006G243800--Sobic006G212800 Sobic004G271600 Sobic004G271600 Sobic006G243800--Sobic004G271600 Sobic001G470300 Sobic001G470300 Sobic006G243800--Sobic001G470300 Sobic001G180200 Sobic001G180200 Sobic006G243800--Sobic001G180200 Sobic006G235400 Sobic006G235400 Sobic006G243800--Sobic006G235400 Sobic006G243800--Sobic006G090100 Sobic006G243800--Sobic006G259600 Sobic006G243800--Sobic009G207900 Sobic005G179300--Sobic006G090100 Sobic005G179300--Sobic001G077300 Sobic003G073800 Sobic003G073800 Sobic005G179300--Sobic003G073800 Sobic005G179300--Sobic006G212800 Sobic005G179300--Sobic009G207900 Sobic005G179300--Sobic001G207800 Sobic005G179300--Sobic009G219100 Sobic005G179300--Sobic004G271600 Sobic005G179300--Sobic002G081400 Sobic003G029500 Sobic003G029500 Sobic008G060000--Sobic003G029500 Sobic006G219600 Sobic006G219600 Sobic008G060000--Sobic006G219600 Sobic009G074400 Sobic009G074400 Sobic008G060000--Sobic009G074400 Sobic006G050700 Sobic006G050700 Sobic008G060000--Sobic006G050700 Sobic006G051800 Sobic006G051800 Sobic008G060000--Sobic006G051800 Sobic006G133900 Sobic006G133900 Sobic008G060000--Sobic006G133900 Sobic004G181600 Sobic004G181600 Sobic008G060000--Sobic004G181600 Sobic002G198200 Sobic002G198200 Sobic008G060000--Sobic002G198200 Sobic008G060000--Sobic001G333800
Octagon: transcription factors


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