Gene annotation
Transcriptome id Sobic.001G314400.1,Sobic.001G314400.2
Synonym AGL19, Sb01g030570, GL19
Functional annotation OsMADS56 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1B6QM88 , A0A1B6QM74
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF208
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G22950 : AGAMOUS-like 19
RAP-DB (Rice) LOC_Os10g39130.1 : OsMADS56 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a032331 , Zm00025a001297 , Zm00025a031749 , Zm00025a026557 , Zm00025a053503 , Zm00025a000309 , Zm00025a052247 , Zm00025a049493
Brachypodium KQK13150 , KQK00790 , KQJ97593 , KQJ97594 , KQJ99121 , KQK23920
Barley HORVU2Hr1G063800.11 , HORVU2Hr1G063800.10 , HORVU1Hr1G051660.5 , HORVU1Hr1G051660.4 , HORVU1Hr1G051660.7 , HORVU1Hr1G051660.6 , HORVU1Hr1G051660.1 , HORVU1Hr1G051660.3 , HORVU1Hr1G051660.2 , HORVU1Hr1G051660.9 , HORVU1Hr1G051660.8 , HORVU2Hr1G063800.9 , HORVU2Hr1G063800.8 , HORVU2Hr1G063800.7 , HORVU2Hr1G063800.6 , HORVU2Hr1G063800.5 , HORVU2Hr1G063800.4 , HORVU2Hr1G063800.2 , HORVU0Hr1G032300.6 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU2Hr1G063800.3 , HORVU2Hr1G063800.1 , HORVU0Hr1G032300.5 , HORVU0Hr1G032300.7 , HORVU0Hr1G032300.2 , HORVU0Hr1G032300.3 , HORVU1Hr1G051660.11 , HORVU1Hr1G051660.10 , HORVU0Hr1G032300.4 , HORVU1Hr1G051660.12 , HORVU0Hr1G032300.1 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.3 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU4Hr1G067680.8 , HORVU4Hr1G067680.3 , HORVU4Hr1G067680.2 , HORVU4Hr1G067680.1 , HORVU4Hr1G067680.7 , HORVU4Hr1G067680.6 , HORVU4Hr1G067680.5 , HORVU4Hr1G067680.4 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU1Hr1G008290.4 , HORVU1Hr1G008290.2 , HORVU1Hr1G008290.3 , HORVU7Hr1G054220.2 , HORVU1Hr1G008290.1
Wheat TraesCS7A02G111800 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS2B02G281000 , TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS7B02G020800 , TraesCS7D02G120500 , TraesCS4A02G028100 , TraesCS5B02G286100 , TraesCS5B02G286100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS2D02G262700 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS4D02G243700 , TraesCS4D02G243700 , TraesCS5B02G396600 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS2B02G200800 , TraesCS1D02G045500 , TraesCS1D02G203400 , TraesCS4B02G245700 , TraesCS2A02G261200 , TraesCS2A02G261200 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS7A02G111900 , TraesCS1B02G214500 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5A02G515500 , TraesCS4D02G341700 , TraesCS4A02G058900 , TraesCS4A02G058900 , TraesCS5B02G396600 , TraesCS1A02G044900 , TraesCS4B02G346700 , TraesCS1B02G058200 , TraesCS4B02G245800 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS6A02G011700 , TraesCS6A02G011700 , TraesCS4A02G028200 , TraesCS1A02G199900 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G001900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
2 Sobic.003G397600 expressed protein -
3 Sobic.005G142700 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
4 Sobic.003G223400 down-regulated TF in developmental senescence(PubMedID : 27586543)@expressed protein K09422: transcription factor MYB, plant
5 Sobic.003G329700 VQ motif family protein, expressed -
6 Sobic.001G448300 phytosulfokines precursor, putative, expressed -
7 Sobic.002G272700 cytochrome P450, putative, expressed -
8 Sobic.006G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
9 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
10 Sobic.006G145700 Probable inactive beta-glucosidase 14 (Precursor)(PubMedID : 26186930)@Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed K05350: beta-glucosidase
11 Sobic.004G268500 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
12 Sobic.001G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine protease 1 precursor, putative, expressed -
13 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
14 Sobic.008G190200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ligA, putative, expressed -
15 Sobic.K028200 cytochrome P450, putative, expressed -
16 Sobic.006G243800 OsWAK55 - OsWAK receptor-like protein kinase, expressed -
17 Sobic.010G205700 Leucine Rich Repeat family protein, expressed -
18 Sobic.002G136100 genetic modifier, putative, expressed -
19 Sobic.008G065200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor protein kinase, putative, expressed -
20 Sobic.002G201900 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic001G314400 Sobic001G314400 Sobic002G001900 Sobic002G001900 Sobic001G314400--Sobic002G001900 Sobic003G397600 Sobic003G397600 Sobic001G314400--Sobic003G397600 Sobic005G142700 Sobic005G142700 Sobic001G314400--Sobic005G142700 Sobic003G223400 Sobic003G223400 Sobic001G314400--Sobic003G223400 Sobic003G329700 Sobic003G329700 Sobic001G314400--Sobic003G329700 Sobic001G448300 Sobic001G448300 Sobic001G314400--Sobic001G448300 Sobic002G272700 Sobic002G272700 Sobic001G314400--Sobic002G272700 Sobic006G036300 Sobic006G036300 Sobic001G314400--Sobic006G036300 Sobic006G123500 Sobic006G123500 Sobic001G314400--Sobic006G123500 Sobic002G001900--Sobic006G123500 Sobic004G268500 Sobic004G268500 Sobic002G001900--Sobic004G268500 Sobic002G001900--Sobic003G223400 Sobic002G001900--Sobic001G314400 Sobic008G065200 Sobic008G065200 Sobic002G001900--Sobic008G065200 Sobic009G045600 Sobic009G045600 Sobic002G001900--Sobic009G045600 Sobic003G255900 Sobic003G255900 Sobic002G001900--Sobic003G255900 Sobic006G055000 Sobic006G055000 Sobic002G001900--Sobic006G055000 Sobic004G099700 Sobic004G099700 Sobic002G001900--Sobic004G099700 Sobic002G136100 Sobic002G136100 Sobic003G397600--Sobic002G136100 Sobic003G328100 Sobic003G328100 Sobic003G397600--Sobic003G328100 Sobic003G397600--Sobic001G314400 Sobic008G046400 Sobic008G046400 Sobic003G397600--Sobic008G046400 Sobic006G145700 Sobic006G145700 Sobic003G397600--Sobic006G145700 Sobic006G140700 Sobic006G140700 Sobic003G397600--Sobic006G140700 Sobic003G437800 Sobic003G437800 Sobic003G397600--Sobic003G437800 Sobic010G177800 Sobic010G177800 Sobic003G397600--Sobic010G177800 Sobic003G397600--Sobic003G329700 Sobic003G157900 Sobic003G157900 Sobic005G142700--Sobic003G157900 Sobic005G142700--Sobic001G314400 Sobic007G090900 Sobic007G090900 Sobic005G142700--Sobic007G090900 Sobic005G142700--Sobic003G329700 Sobic008G077500 Sobic008G077500 Sobic005G142700--Sobic008G077500 Sobic008G190200 Sobic008G190200 Sobic005G142700--Sobic008G190200 Sobic005G142700--Sobic002G136100 Sobic006G212800 Sobic006G212800 Sobic005G142700--Sobic006G212800 Sobic005G142700--Sobic003G397600 Sobic009G207900 Sobic009G207900 Sobic003G223400--Sobic009G207900 Sobic004G179400 Sobic004G179400 Sobic003G223400--Sobic004G179400 Sobic006G026100 Sobic006G026100 Sobic003G223400--Sobic006G026100 Sobic007G107700 Sobic007G107700 Sobic003G223400--Sobic007G107700 Sobic003G223400--Sobic006G212800 Sobic003G327000 Sobic003G327000 Sobic003G223400--Sobic003G327000 Sobic003G284800 Sobic003G284800 Sobic003G223400--Sobic003G284800 Sobic009G062400 Sobic009G062400 Sobic003G223400--Sobic009G062400 Sobic003G223400--Sobic002G001900 Sobic006G041000 Sobic006G041000 Sobic003G329700--Sobic006G041000 Sobic007G121300 Sobic007G121300 Sobic003G329700--Sobic007G121300 Sobic003G329700--Sobic003G397600 Sobic002G108500 Sobic002G108500 Sobic003G329700--Sobic002G108500 Sobic003G329700--Sobic005G142700 Sobic003G329700--Sobic003G157900 Sobic009G259100 Sobic009G259100 Sobic003G329700--Sobic009G259100 Sobic003G329700--Sobic006G212800 Sobic002G275100 Sobic002G275100 Sobic003G329700--Sobic002G275100 Sobic004G217700 Sobic004G217700 Sobic001G448300--Sobic004G217700 Sobic010G130800 Sobic010G130800 Sobic001G448300--Sobic010G130800 Sobic002G040400 Sobic002G040400 Sobic001G448300--Sobic002G040400 Sobic009G014600 Sobic009G014600 Sobic001G448300--Sobic009G014600 Sobic001G056500 Sobic001G056500 Sobic001G448300--Sobic001G056500 Sobic001G056400 Sobic001G056400 Sobic001G448300--Sobic001G056400 Sobic001G125700 Sobic001G125700 Sobic001G448300--Sobic001G125700 Sobic007G076000 Sobic007G076000 Sobic001G448300--Sobic007G076000 Sobic007G055600 Sobic007G055600 Sobic001G448300--Sobic007G055600 Sobic002G272700--Sobic003G397600 Sobic002G272700--Sobic006G036300 Sobic002G272700--Sobic001G314400 Sobic002G272700--Sobic006G145700 Sobic010G178000 Sobic010G178000 Sobic002G272700--Sobic010G178000 Sobic002G272700--Sobic008G046400 Sobic002G272700--Sobic002G001900 Sobic010G205700 Sobic010G205700 Sobic002G272700--Sobic010G205700 Sobic002G272700--Sobic008G190200 Sobic006G036300--Sobic010G178000 Sobic006G036300--Sobic006G145700 Sobic010G207100 Sobic010G207100 Sobic006G036300--Sobic010G207100 Sobic001G434000 Sobic001G434000 Sobic006G036300--Sobic001G434000 Sobic002G132400 Sobic002G132400 Sobic006G036300--Sobic002G132400 Sobic002G408000 Sobic002G408000 Sobic006G036300--Sobic002G408000 Sobic001G492600 Sobic001G492600 Sobic006G036300--Sobic001G492600 Sobic004G271600 Sobic004G271600 Sobic006G036300--Sobic004G271600 Sobic002G351200 Sobic002G351200 Sobic006G036300--Sobic002G351200 Sobic006G123500--Sobic004G268500 Sobic001G404500 Sobic001G404500 Sobic006G123500--Sobic001G404500 Sobic006G123500--Sobic004G099700 Sobic005G187900 Sobic005G187900 Sobic006G123500--Sobic005G187900 Sobic006G123500--Sobic003G284800 Sobic002G046900 Sobic002G046900 Sobic006G123500--Sobic002G046900 Sobic004G063200 Sobic004G063200 Sobic006G123500--Sobic004G063200 Sobic006G123500--Sobic008G065200 Sobic006G123500--Sobic002G001900
Octagon: transcription factors


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