Gene annotation
Transcriptome id Sobic.003G223400.1
Synonym Sb03g028170, ETC3, CPL3
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
expressed protein
UniProt C5XR42
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF620
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01060 : CAPRICE-like MYB3
RAP-DB (Rice) LOC_Os01g43230.2 : expressed protein
MaizeGDB (Corn) Zm00025a028389
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207900 expressed protein -
2 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
3 Sobic.006G026100 expressed protein -
4 Sobic.007G107700 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
5 Sobic.006G212800 expressed protein -
6 Sobic.003G327000 bZIP transcription factor domain containing protein, expressed -
7 Sobic.003G284800 heat shock protein DnaJ, putative, expressed -
8 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
9 Sobic.002G001900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
10 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
11 Sobic.002G136100 genetic modifier, putative, expressed -
12 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
14 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
15 Sobic.003G014300 expressed protein -
16 Sobic.007G015500 no apical meristem protein, putative, expressed -
17 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
18 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
19 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
20 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2


Gene co-expression network
sample Sobic003G223400 Sobic003G223400 Sobic009G207900 Sobic009G207900 Sobic003G223400--Sobic009G207900 Sobic004G179400 Sobic004G179400 Sobic003G223400--Sobic004G179400 Sobic006G026100 Sobic006G026100 Sobic003G223400--Sobic006G026100 Sobic007G107700 Sobic007G107700 Sobic003G223400--Sobic007G107700 Sobic006G212800 Sobic006G212800 Sobic003G223400--Sobic006G212800 Sobic003G327000 Sobic003G327000 Sobic003G223400--Sobic003G327000 Sobic003G284800 Sobic003G284800 Sobic003G223400--Sobic003G284800 Sobic009G062400 Sobic009G062400 Sobic003G223400--Sobic009G062400 Sobic002G001900 Sobic002G001900 Sobic003G223400--Sobic002G001900 Sobic009G207900--Sobic006G212800 Sobic001G180200 Sobic001G180200 Sobic009G207900--Sobic001G180200 Sobic002G206300 Sobic002G206300 Sobic009G207900--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic009G207900--Sobic001G504400 Sobic009G219100 Sobic009G219100 Sobic009G207900--Sobic009G219100 Sobic007G135800 Sobic007G135800 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G207900--Sobic009G062400 Sobic001G540600 Sobic001G540600 Sobic004G179400--Sobic001G540600 Sobic001G060500 Sobic001G060500 Sobic004G179400--Sobic001G060500 Sobic004G179400--Sobic009G207900 Sobic002G028400 Sobic002G028400 Sobic004G179400--Sobic002G028400 Sobic008G074000 Sobic008G074000 Sobic004G179400--Sobic008G074000 Sobic003G125900 Sobic003G125900 Sobic004G179400--Sobic003G125900 Sobic001G378100 Sobic001G378100 Sobic004G179400--Sobic001G378100 Sobic009G170200 Sobic009G170200 Sobic004G179400--Sobic009G170200 Sobic004G179400--Sobic001G504400 Sobic006G140700 Sobic006G140700 Sobic006G026100--Sobic006G140700 Sobic007G169100 Sobic007G169100 Sobic006G026100--Sobic007G169100 Sobic006G026100--Sobic003G284800 Sobic006G097500 Sobic006G097500 Sobic006G026100--Sobic006G097500 Sobic003G328100 Sobic003G328100 Sobic006G026100--Sobic003G328100 Sobic006G026100--Sobic009G062400 Sobic001G368600 Sobic001G368600 Sobic006G026100--Sobic001G368600 Sobic006G155500 Sobic006G155500 Sobic006G026100--Sobic006G155500 Sobic002G136100 Sobic002G136100 Sobic006G026100--Sobic002G136100 Sobic007G107700--Sobic003G328100 Sobic003G070900 Sobic003G070900 Sobic007G107700--Sobic003G070900 Sobic003G203000 Sobic003G203000 Sobic007G107700--Sobic003G203000 Sobic007G107700--Sobic009G170200 Sobic005G028800 Sobic005G028800 Sobic007G107700--Sobic005G028800 Sobic001G118400 Sobic001G118400 Sobic007G107700--Sobic001G118400 Sobic007G107700--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic007G107700--Sobic010G231500 Sobic007G107700--Sobic001G368600 Sobic006G212800--Sobic009G207900 Sobic001G077300 Sobic001G077300 Sobic006G212800--Sobic001G077300 Sobic006G212800--Sobic001G180200 Sobic006G212800--Sobic007G135800 Sobic006G212800--Sobic002G206300 Sobic009G073900 Sobic009G073900 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic002G162400 Sobic002G162400 Sobic006G212800--Sobic002G162400 Sobic003G327000--Sobic009G207900 Sobic003G094100 Sobic003G094100 Sobic003G327000--Sobic003G094100 Sobic003G327000--Sobic001G504400 Sobic001G393300 Sobic001G393300 Sobic003G327000--Sobic001G393300 Sobic002G298800 Sobic002G298800 Sobic003G327000--Sobic002G298800 Sobic003G327000--Sobic009G038701 Sobic003G327000--Sobic007G135800 Sobic002G198300 Sobic002G198300 Sobic003G327000--Sobic002G198300 Sobic010G125833 Sobic010G125833 Sobic003G327000--Sobic010G125833 Sobic002G112400 Sobic002G112400 Sobic003G284800--Sobic002G112400 Sobic003G284800--Sobic009G062400 Sobic003G253300 Sobic003G253300 Sobic003G284800--Sobic003G253300 Sobic006G265900 Sobic006G265900 Sobic003G284800--Sobic006G265900 Sobic002G061900 Sobic002G061900 Sobic003G284800--Sobic002G061900 Sobic003G284800--Sobic006G097500 Sobic007G053800 Sobic007G053800 Sobic003G284800--Sobic007G053800 Sobic001G128600 Sobic001G128600 Sobic003G284800--Sobic001G128600 Sobic008G006100 Sobic008G006100 Sobic003G284800--Sobic008G006100 Sobic009G062400--Sobic008G006100 Sobic009G062400--Sobic002G112400 Sobic009G062400--Sobic009G207900 Sobic009G062400--Sobic009G219100 Sobic003G037300 Sobic003G037300 Sobic009G062400--Sobic003G037300 Sobic004G154400 Sobic004G154400 Sobic009G062400--Sobic004G154400 Sobic001G286600 Sobic001G286600 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic009G062400--Sobic003G284800 Sobic006G123500 Sobic006G123500 Sobic002G001900--Sobic006G123500 Sobic004G268500 Sobic004G268500 Sobic002G001900--Sobic004G268500 Sobic002G001900--Sobic003G223400 Sobic001G314400 Sobic001G314400 Sobic002G001900--Sobic001G314400 Sobic008G065200 Sobic008G065200 Sobic002G001900--Sobic008G065200 Sobic009G045600 Sobic009G045600 Sobic002G001900--Sobic009G045600 Sobic003G255900 Sobic003G255900 Sobic002G001900--Sobic003G255900 Sobic006G055000 Sobic006G055000 Sobic002G001900--Sobic006G055000 Sobic004G099700 Sobic004G099700 Sobic002G001900--Sobic004G099700
Octagon: transcription factors


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