Gene annotation
Transcriptome id Sobic.003G329700.1
Synonym Sb03g037575, SIB1
Functional annotation VQ motif family protein, expressed
UniProt C5XN35
Pfam PF05678
Panther DB PTHR33624 PTHR33624:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56710 : sigma factor binding protein 1
RAP-DB (Rice) LOC_Os05g32460.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039820
Brachypodium PNT73059
Barley HORVU3Hr1G079180.2 , HORVU3Hr1G079180.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G329700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G041000 "Oxidoreductase, zinc-binding dehydrogenase family protein"("PubMedID : 26759170,PubMedID : 24597475")@dehydrogenase, putative, expressed -
2 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
3 Sobic.003G397600 expressed protein -
4 Sobic.002G108500 cytochrome P450, putative, expressed -
5 Sobic.005G142700 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
6 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -
7 Sobic.009G259100 CCT motif family protein, expressed -
8 Sobic.006G212800 expressed protein -
9 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
10 Sobic.004G317800 - -
11 Sobic.003G012400 flavin monooxygenase, putative, expressed -
12 Sobic.006G235300 expressed protein -
13 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
14 Sobic.001G313000 expressed protein -
15 Sobic.007G006200 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.001G112900 expressed protein -
17 Sobic.001G492600 VQ domain containing protein, putative, expressed -
18 Sobic.001G314400 OsMADS56 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
20 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic003G329700 Sobic003G329700 Sobic006G041000 Sobic006G041000 Sobic003G329700--Sobic006G041000 Sobic007G121300 Sobic007G121300 Sobic003G329700--Sobic007G121300 Sobic003G397600 Sobic003G397600 Sobic003G329700--Sobic003G397600 Sobic002G108500 Sobic002G108500 Sobic003G329700--Sobic002G108500 Sobic005G142700 Sobic005G142700 Sobic003G329700--Sobic005G142700 Sobic003G157900 Sobic003G157900 Sobic003G329700--Sobic003G157900 Sobic009G259100 Sobic009G259100 Sobic003G329700--Sobic009G259100 Sobic006G212800 Sobic006G212800 Sobic003G329700--Sobic006G212800 Sobic002G275100 Sobic002G275100 Sobic003G329700--Sobic002G275100 Sobic006G041000--Sobic009G259100 Sobic004G190100 Sobic004G190100 Sobic006G041000--Sobic004G190100 Sobic001G112900 Sobic001G112900 Sobic006G041000--Sobic001G112900 Sobic003G440300 Sobic003G440300 Sobic006G041000--Sobic003G440300 Sobic004G267700 Sobic004G267700 Sobic006G041000--Sobic004G267700 Sobic002G351200 Sobic002G351200 Sobic006G041000--Sobic002G351200 Sobic002G213400 Sobic002G213400 Sobic006G041000--Sobic002G213400 Sobic006G041000--Sobic007G121300 Sobic003G304300 Sobic003G304300 Sobic006G041000--Sobic003G304300 Sobic004G128900 Sobic004G128900 Sobic007G121300--Sobic004G128900 Sobic002G161400 Sobic002G161400 Sobic007G121300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic007G121300--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic007G121300--Sobic001G331600 Sobic003G340300 Sobic003G340300 Sobic007G121300--Sobic003G340300 Sobic007G121300--Sobic009G259100 Sobic006G191500 Sobic006G191500 Sobic007G121300--Sobic006G191500 Sobic001G485100 Sobic001G485100 Sobic007G121300--Sobic001G485100 Sobic004G035100 Sobic004G035100 Sobic007G121300--Sobic004G035100 Sobic002G136100 Sobic002G136100 Sobic003G397600--Sobic002G136100 Sobic003G328100 Sobic003G328100 Sobic003G397600--Sobic003G328100 Sobic001G314400 Sobic001G314400 Sobic003G397600--Sobic001G314400 Sobic008G046400 Sobic008G046400 Sobic003G397600--Sobic008G046400 Sobic006G145700 Sobic006G145700 Sobic003G397600--Sobic006G145700 Sobic006G140700 Sobic006G140700 Sobic003G397600--Sobic006G140700 Sobic003G437800 Sobic003G437800 Sobic003G397600--Sobic003G437800 Sobic010G177800 Sobic010G177800 Sobic003G397600--Sobic010G177800 Sobic003G397600--Sobic003G329700 Sobic010G178000 Sobic010G178000 Sobic002G108500--Sobic010G178000 Sobic004G214800 Sobic004G214800 Sobic002G108500--Sobic004G214800 Sobic002G108500--Sobic001G112900 Sobic006G036300 Sobic006G036300 Sobic002G108500--Sobic006G036300 Sobic003G154400 Sobic003G154400 Sobic002G108500--Sobic003G154400 Sobic002G108500--Sobic004G267700 Sobic003G339200 Sobic003G339200 Sobic002G108500--Sobic003G339200 Sobic005G002400 Sobic005G002400 Sobic002G108500--Sobic005G002400 Sobic003G326000 Sobic003G326000 Sobic002G108500--Sobic003G326000 Sobic005G142700--Sobic003G157900 Sobic005G142700--Sobic001G314400 Sobic007G090900 Sobic007G090900 Sobic005G142700--Sobic007G090900 Sobic005G142700--Sobic003G329700 Sobic008G077500 Sobic008G077500 Sobic005G142700--Sobic008G077500 Sobic008G190200 Sobic008G190200 Sobic005G142700--Sobic008G190200 Sobic005G142700--Sobic002G136100 Sobic005G142700--Sobic006G212800 Sobic005G142700--Sobic003G397600 Sobic003G157900--Sobic007G090900 Sobic003G157900--Sobic006G212800 Sobic003G380200 Sobic003G380200 Sobic003G157900--Sobic003G380200 Sobic009G103000 Sobic009G103000 Sobic003G157900--Sobic009G103000 Sobic003G157900--Sobic002G136100 Sobic003G157900--Sobic002G275100 Sobic003G157900--Sobic004G267700 Sobic002G162400 Sobic002G162400 Sobic003G157900--Sobic002G162400 Sobic006G213700 Sobic006G213700 Sobic003G157900--Sobic006G213700 Sobic009G259100--Sobic002G275100 Sobic009G259100--Sobic003G380200 Sobic009G259100--Sobic004G344600 Sobic009G259100--Sobic004G267700 Sobic010G100900 Sobic010G100900 Sobic009G259100--Sobic010G100900 Sobic009G259100--Sobic003G304300 Sobic009G259100--Sobic007G121300 Sobic009G259100--Sobic002G351200 Sobic009G259100--Sobic002G161400 Sobic009G207900 Sobic009G207900 Sobic006G212800--Sobic009G207900 Sobic001G077300 Sobic001G077300 Sobic006G212800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic006G212800--Sobic001G180200 Sobic007G135800 Sobic007G135800 Sobic006G212800--Sobic007G135800 Sobic002G206300 Sobic002G206300 Sobic006G212800--Sobic002G206300 Sobic009G073900 Sobic009G073900 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic006G212800--Sobic002G162400 Sobic002G275100--Sobic009G259100 Sobic002G275100--Sobic003G380200 Sobic004G127800 Sobic004G127800 Sobic002G275100--Sobic004G127800 Sobic002G275100--Sobic010G100900 Sobic010G223200 Sobic010G223200 Sobic002G275100--Sobic010G223200 Sobic002G275100--Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G275100--Sobic004G271600 Sobic007G006200 Sobic007G006200 Sobic002G275100--Sobic007G006200 Sobic002G275100--Sobic006G191500
Octagon: transcription factors


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