Gene annotation
Transcriptome id Sobic.001G448300.1
Synonym Sb01g042120, PSK2, ATPSK2
Functional annotation phytosulfokines precursor, putative, expressed
UniProt C5WRS2
Pfam PF06404
Panther DB PTHR33285 PTHR33285:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008283; cell population proliferation GO:0008083growth factor activity GO:0005576extracellular region


Orthologs (automatic annotation)
TAIR AT2G22860 : phytosulfokine 2 precursor
RAP-DB (Rice) LOC_Os03g12990.1 : phytosulfokines precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052985
Brachypodium KQK22763
Barley HORVU4Hr1G066000.2 , HORVU4Hr1G066000.1
Wheat TraesCS4D02G237400 , TraesCS4A02G060600 , TraesCS4B02G236000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G217700 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
2 Sobic.010G130800 Acyl activating enzyme 1 AAE1 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed K00666: fatty-acyl-CoA synthase
3 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
5 Sobic.001G056500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
6 Sobic.001G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
7 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
8 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
9 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
10 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
11 Sobic.002G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
12 Sobic.005G182701 - -
13 Sobic.001G432500 expressed protein -
14 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
15 Sobic.002G087500 - -
16 Sobic.003G378301 - K17362: acyl-coenzyme A thioesterase 13
17 Sobic.005G219000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed -
18 Sobic.002G391700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed K00430: peroxidase
19 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
20 Sobic.005G219100 patatin, putative, expressed -


Gene co-expression network
sample Sobic001G448300 Sobic001G448300 Sobic004G217700 Sobic004G217700 Sobic001G448300--Sobic004G217700 Sobic010G130800 Sobic010G130800 Sobic001G448300--Sobic010G130800 Sobic002G040400 Sobic002G040400 Sobic001G448300--Sobic002G040400 Sobic009G014600 Sobic009G014600 Sobic001G448300--Sobic009G014600 Sobic001G056500 Sobic001G056500 Sobic001G448300--Sobic001G056500 Sobic001G056400 Sobic001G056400 Sobic001G448300--Sobic001G056400 Sobic001G125700 Sobic001G125700 Sobic001G448300--Sobic001G125700 Sobic007G076000 Sobic007G076000 Sobic001G448300--Sobic007G076000 Sobic007G055600 Sobic007G055600 Sobic001G448300--Sobic007G055600 Sobic002G423600 Sobic002G423600 Sobic004G217700--Sobic002G423600 Sobic004G217700--Sobic001G056500 Sobic004G217700--Sobic001G056400 Sobic003G378301 Sobic003G378301 Sobic004G217700--Sobic003G378301 Sobic005G182701 Sobic005G182701 Sobic004G217700--Sobic005G182701 SobicK044407 SobicK044407 Sobic004G217700--SobicK044407 Sobic006G045000 Sobic006G045000 Sobic004G217700--Sobic006G045000 Sobic001G410450 Sobic001G410450 Sobic004G217700--Sobic001G410450 Sobic002G041800 Sobic002G041800 Sobic004G217700--Sobic002G041800 Sobic003G310200 Sobic003G310200 Sobic010G130800--Sobic003G310200 Sobic010G130800--Sobic003G378301 Sobic008G060300 Sobic008G060300 Sobic010G130800--Sobic008G060300 Sobic006G060800 Sobic006G060800 Sobic010G130800--Sobic006G060800 Sobic010G130800--Sobic001G448300 Sobic007G089300 Sobic007G089300 Sobic010G130800--Sobic007G089300 Sobic010G130800--Sobic001G056400 Sobic001G012000 Sobic001G012000 Sobic010G130800--Sobic001G012000 Sobic003G096500 Sobic003G096500 Sobic010G130800--Sobic003G096500 Sobic008G028600 Sobic008G028600 Sobic002G040400--Sobic008G028600 Sobic002G087500 Sobic002G087500 Sobic002G040400--Sobic002G087500 Sobic002G298400 Sobic002G298400 Sobic002G040400--Sobic002G298400 Sobic002G391700 Sobic002G391700 Sobic002G040400--Sobic002G391700 Sobic006G005500 Sobic006G005500 Sobic002G040400--Sobic006G005500 Sobic005G219000 Sobic005G219000 Sobic002G040400--Sobic005G219000 Sobic002G040400--Sobic001G125700 Sobic008G077800 Sobic008G077800 Sobic002G040400--Sobic008G077800 Sobic002G040400--Sobic007G076000 Sobic009G014600--Sobic007G076000 Sobic009G014600--Sobic007G055600 Sobic009G014600--Sobic002G040400 Sobic009G014600--Sobic006G005500 Sobic009G014600--Sobic008G028600 Sobic009G014600--Sobic001G125700 Sobic009G014600--Sobic002G087500 Sobic009G014600--Sobic005G182701 Sobic009G014600--Sobic005G219000 Sobic001G056500--Sobic009G014600 Sobic001G056500--Sobic005G182701 Sobic001G056500--Sobic007G055600 Sobic001G056500--Sobic001G056400 Sobic001G056500--Sobic004G217700 Sobic001G056500--Sobic007G076000 Sobic001G056500--Sobic002G423600 Sobic001G056500--Sobic006G005500 Sobic001G056500--Sobic001G125700 Sobic001G056400--Sobic005G182701 Sobic001G056400--Sobic001G012000 Sobic001G056400--Sobic007G055600 Sobic001G056400--SobicK044407 Sobic001G056400--Sobic003G378301 Sobic001G056400--Sobic007G076000 Sobic001G056400--Sobic002G423600 Sobic001G056400--Sobic001G056500 Sobic001G056400--Sobic006G045000 Sobic001G125700--Sobic006G005500 Sobic001G125700--Sobic005G219000 Sobic005G219100 Sobic005G219100 Sobic001G125700--Sobic005G219100 Sobic001G125700--Sobic008G028600 Sobic001G125700--Sobic007G076000 Sobic001G125700--Sobic002G040400 Sobic006G005400 Sobic006G005400 Sobic001G125700--Sobic006G005400 Sobic001G125700--Sobic007G055600 Sobic006G007100 Sobic006G007100 Sobic001G125700--Sobic006G007100 Sobic007G076000--Sobic007G055600 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic006G007650 Sobic006G007650 Sobic007G076000--Sobic006G007650 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic007G055600--Sobic001G056400 Sobic007G055600--Sobic002G040400 Sobic007G055600--Sobic008G028600 Sobic009G115400 Sobic009G115400 Sobic007G055600--Sobic009G115400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.