Gene annotation
Transcriptome id Sobic.001G489900.1
Synonym Sb01g045840, DNA binding with One Finger, SbDof23, CDF2, SbDof23;DNA binding with One Finger
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method. (PubMedID : 22476870)
expressed protein
UniProt B3VKW3 , C5WWR6
Pfam PF02701
Panther DB PTHR31089 PTHR31089:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G39660 : cycling DOF factor 2
RAP-DB (Rice) LOC_Os03g07360.1 : expressed protein
MaizeGDB (Corn) Zm00025a049197 , Zm00025a006998 , Zm00025a000851
Brachypodium KQK23432
Barley HORVU4Hr1G074990.3 , HORVU4Hr1G074990.2 , HORVU4Hr1G074990.1
Wheat TraesCS4B02G286400 , TraesCS4D02G285100 , TraesCS4A02G017700
Populus -


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cDNA sequences
Sobic.001G489900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G336200 expressed protein -
2 Sobic.001G167800 single-stranded DNA-binding protein, putative, expressed -
3 Sobic.004G165700 expressed protein -
4 Sobic.001G168000 OsFBD13 - F-box and FBD domain containing protein, expressed -
5 Sobic.003G264700 expressed protein -
6 Sobic.002G088200 expressed protein -
7 Sobic.010G082800 calvin cycle protein CP12, putative, expressed -
8 Sobic.001G000800 -(PubMedID : 26976818)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
9 Sobic.003G413800 cytochrome P450, putative, expressed -
10 Sobic.002G314200 ATP-dependent protease, putative, expressed -
11 Sobic.004G187100 BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
12 Sobic.007G015500 no apical meristem protein, putative, expressed -
13 Sobic.001G310800 lectin-like receptor kinase, putative, expressed -
14 Sobic.004G302600 cyclin-T1-2, putative, expressed K15188: cyclin T
15 Sobic.008G193200 expressed protein -
16 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
17 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
18 Sobic.004G183300 expressed protein -
19 Sobic.001G374400 Heavy metal transport/detoxification superfamily protein(PubMedID : 26465154)@heavy metal-associated domain containing protein, expressed -
20 Sobic.001G284100 RCD1, putative, expressed -


Gene co-expression network
sample Sobic001G489900 Sobic001G489900 Sobic003G336200 Sobic003G336200 Sobic001G489900--Sobic003G336200 Sobic001G167800 Sobic001G167800 Sobic001G489900--Sobic001G167800 Sobic004G165700 Sobic004G165700 Sobic001G489900--Sobic004G165700 Sobic001G168000 Sobic001G168000 Sobic001G489900--Sobic001G168000 Sobic003G264700 Sobic003G264700 Sobic001G489900--Sobic003G264700 Sobic002G088200 Sobic002G088200 Sobic001G489900--Sobic002G088200 Sobic010G082800 Sobic010G082800 Sobic001G489900--Sobic010G082800 Sobic001G000800 Sobic001G000800 Sobic001G489900--Sobic001G000800 Sobic003G413800 Sobic003G413800 Sobic001G489900--Sobic003G413800 Sobic010G244600 Sobic010G244600 Sobic003G336200--Sobic010G244600 Sobic004G072000 Sobic004G072000 Sobic003G336200--Sobic004G072000 Sobic001G543500 Sobic001G543500 Sobic003G336200--Sobic001G543500 Sobic003G336200--Sobic002G088200 Sobic003G107100 Sobic003G107100 Sobic003G336200--Sobic003G107100 Sobic009G255300 Sobic009G255300 Sobic003G336200--Sobic009G255300 Sobic005G169800 Sobic005G169800 Sobic003G336200--Sobic005G169800 Sobic004G034500 Sobic004G034500 Sobic003G336200--Sobic004G034500 Sobic007G204400 Sobic007G204400 Sobic003G336200--Sobic007G204400 Sobic004G183300 Sobic004G183300 Sobic001G167800--Sobic004G183300 Sobic006G122500 Sobic006G122500 Sobic001G167800--Sobic006G122500 Sobic001G167800--Sobic001G489900 Sobic002G104400 Sobic002G104400 Sobic001G167800--Sobic002G104400 Sobic003G089600 Sobic003G089600 Sobic001G167800--Sobic003G089600 Sobic003G077600 Sobic003G077600 Sobic001G167800--Sobic003G077600 Sobic001G167800--Sobic003G336200 Sobic006G168500 Sobic006G168500 Sobic001G167800--Sobic006G168500 Sobic001G316100 Sobic001G316100 Sobic001G167800--Sobic001G316100 Sobic003G403900 Sobic003G403900 Sobic004G165700--Sobic003G403900 Sobic009G133700 Sobic009G133700 Sobic004G165700--Sobic009G133700 Sobic007G157300 Sobic007G157300 Sobic004G165700--Sobic007G157300 Sobic009G004100 Sobic009G004100 Sobic004G165700--Sobic009G004100 Sobic010G042400 Sobic010G042400 Sobic004G165700--Sobic010G042400 Sobic003G203000 Sobic003G203000 Sobic004G165700--Sobic003G203000 Sobic006G158700 Sobic006G158700 Sobic004G165700--Sobic006G158700 Sobic009G237000 Sobic009G237000 Sobic004G165700--Sobic009G237000 Sobic009G024300 Sobic009G024300 Sobic004G165700--Sobic009G024300 Sobic001G284100 Sobic001G284100 Sobic001G168000--Sobic001G284100 Sobic001G168000--Sobic005G169800 Sobic001G168000--Sobic003G336200 Sobic001G168000--Sobic009G255300 Sobic005G195000 Sobic005G195000 Sobic001G168000--Sobic005G195000 Sobic009G143900 Sobic009G143900 Sobic001G168000--Sobic009G143900 Sobic003G249400 Sobic003G249400 Sobic001G168000--Sobic003G249400 Sobic001G017900 Sobic001G017900 Sobic001G168000--Sobic001G017900 Sobic003G161200 Sobic003G161200 Sobic001G168000--Sobic003G161200 Sobic004G023400 Sobic004G023400 Sobic003G264700--Sobic004G023400 Sobic004G204500 Sobic004G204500 Sobic003G264700--Sobic004G204500 Sobic003G264700--Sobic007G204400 Sobic003G264700--Sobic002G088200 Sobic003G309700 Sobic003G309700 Sobic003G264700--Sobic003G309700 Sobic009G237800 Sobic009G237800 Sobic003G264700--Sobic009G237800 Sobic003G264700--Sobic010G042400 Sobic001G381900 Sobic001G381900 Sobic003G264700--Sobic001G381900 Sobic003G264700--Sobic001G543500 Sobic002G088200--Sobic001G543500 Sobic001G516800 Sobic001G516800 Sobic002G088200--Sobic001G516800 Sobic004G033900 Sobic004G033900 Sobic002G088200--Sobic004G033900 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic006G118000 Sobic006G118000 Sobic002G088200--Sobic006G118000 Sobic002G119500 Sobic002G119500 Sobic002G088200--Sobic002G119500 Sobic001G147400 Sobic001G147400 Sobic002G088200--Sobic001G147400 Sobic010G208000 Sobic010G208000 Sobic002G088200--Sobic010G208000 Sobic010G082800--Sobic002G256000 Sobic005G021600 Sobic005G021600 Sobic010G082800--Sobic005G021600 Sobic009G138900 Sobic009G138900 Sobic010G082800--Sobic009G138900 Sobic009G253000 Sobic009G253000 Sobic010G082800--Sobic009G253000 Sobic008G063100 Sobic008G063100 Sobic010G082800--Sobic008G063100 Sobic003G421400 Sobic003G421400 Sobic010G082800--Sobic003G421400 Sobic002G038300 Sobic002G038300 Sobic010G082800--Sobic002G038300 Sobic002G386400 Sobic002G386400 Sobic010G082800--Sobic002G386400 Sobic002G195700 Sobic002G195700 Sobic010G082800--Sobic002G195700 Sobic008G065000 Sobic008G065000 Sobic001G000800--Sobic008G065000 Sobic001G000800--Sobic004G165700 Sobic003G408000 Sobic003G408000 Sobic001G000800--Sobic003G408000 Sobic008G073100 Sobic008G073100 Sobic001G000800--Sobic008G073100 Sobic003G301300 Sobic003G301300 Sobic001G000800--Sobic003G301300 Sobic004G353100 Sobic004G353100 Sobic001G000800--Sobic004G353100 Sobic001G093500 Sobic001G093500 Sobic001G000800--Sobic001G093500 Sobic003G077400 Sobic003G077400 Sobic001G000800--Sobic003G077400 Sobic002G405100 Sobic002G405100 Sobic001G000800--Sobic002G405100 Sobic002G366100 Sobic002G366100 Sobic003G413800--Sobic002G366100 Sobic001G005500 Sobic001G005500 Sobic003G413800--Sobic001G005500 Sobic001G048000 Sobic001G048000 Sobic003G413800--Sobic001G048000 Sobic001G525900 Sobic001G525900 Sobic003G413800--Sobic001G525900 Sobic006G269400 Sobic006G269400 Sobic003G413800--Sobic006G269400 Sobic007G191900 Sobic007G191900 Sobic003G413800--Sobic007G191900 Sobic004G224500 Sobic004G224500 Sobic003G413800--Sobic004G224500 Sobic003G413800--Sobic002G195700 Sobic001G275200 Sobic001G275200 Sobic003G413800--Sobic001G275200
Octagon: transcription factors


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