Gene annotation
Transcriptome id Sobic.004G187100.4,Sobic.004G187100.1,Sobic.004G187100.2,Sobic.004G187100.3
Synonym JK218, Sb04g023550, RPT3, NPH3
Functional annotation BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt C5XVL3 , A0A1Z5RNL7
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination


Orthologs (automatic annotation)
TAIR AT5G64330 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os02g35970.1 : BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a008065 , Zm00025a012287 , Zm00025a009620 , Zm00025a027282 , Zm00025a020770
Brachypodium KQK10073 , KQJ99936 , PNT61947 , KQK13304 , KQK00153 , KQJ99984 , KQJ99983 , PNT61948 , PNT61949
Barley HORVU6Hr1G015480.2 , HORVU6Hr1G015480.3 , HORVU6Hr1G015480.1 , HORVU6Hr1G015480.6 , HORVU6Hr1G015480.7 , HORVU6Hr1G015480.4 , HORVU6Hr1G015480.5 , HORVU6Hr1G015480.8 , HORVU3Hr1G080670.2 , HORVU3Hr1G080670.1 , HORVU3Hr1G076740.2 , HORVU3Hr1G076740.1
Wheat TraesCS2B02G557300 , TraesCS2B02G557300 , TraesCS7A02G149100 , TraesCS2A02G526900 , TraesCS6B02G117400 , TraesCS3A02G317300 , TraesCSU02G114000 , TraesCS6A02G085100 , TraesCS2D02G529600 , TraesCS3D02G314000 , TraesCS7A02G149100 , TraesCS7A02G149100 , TraesCS3B02G349200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
2 Sobic.004G033900 expressed protein -
3 Sobic.001G316100 expressed protein -
4 Sobic.009G206400 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
5 Sobic.003G336200 expressed protein -
6 Sobic.010G082800 calvin cycle protein CP12, putative, expressed -
7 Sobic.001G077100 pentatricopeptide, putative, expressed -
8 Sobic.001G357800 amino acid permease family protein, putative, expressed -
9 Sobic.009G138900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G270400 amino acid permease family protein, putative, expressed -
11 Sobic.003G107100 peptide transporter PTR2, putative, expressed -
12 Sobic.005G169800 GTPase of unknown function domain containing protein, putative, expressed K03665: GTPase
13 Sobic.001G004500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
14 Sobic.010G060000 - -
15 Sobic.004G072000 ribosome, putative, expressed -
16 Sobic.005G052000 serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
17 Sobic.010G244600 nifU, putative, expressed -
18 Sobic.001G281800 enzyme of the cupin superfamily protein, putative, expressed -
19 Sobic.007G136600 SET domain-containing protein, putative, expressed -
20 Sobic.010G108500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic004G187100 Sobic004G187100 Sobic004G034500 Sobic004G034500 Sobic004G187100--Sobic004G034500 Sobic004G033900 Sobic004G033900 Sobic004G187100--Sobic004G033900 Sobic001G316100 Sobic001G316100 Sobic004G187100--Sobic001G316100 Sobic009G206400 Sobic009G206400 Sobic004G187100--Sobic009G206400 Sobic003G336200 Sobic003G336200 Sobic004G187100--Sobic003G336200 Sobic010G082800 Sobic010G082800 Sobic004G187100--Sobic010G082800 Sobic001G077100 Sobic001G077100 Sobic004G187100--Sobic001G077100 Sobic001G357800 Sobic001G357800 Sobic004G187100--Sobic001G357800 Sobic009G138900 Sobic009G138900 Sobic004G187100--Sobic009G138900 Sobic004G072000 Sobic004G072000 Sobic004G034500--Sobic004G072000 Sobic010G208000 Sobic010G208000 Sobic004G034500--Sobic010G208000 Sobic001G516800 Sobic001G516800 Sobic004G034500--Sobic001G516800 Sobic001G030200 Sobic001G030200 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G066300 Sobic004G066300 Sobic004G034500--Sobic004G066300 Sobic004G034500--Sobic004G033900 Sobic008G131200 Sobic008G131200 Sobic004G034500--Sobic008G131200 Sobic001G543500 Sobic001G543500 Sobic004G034500--Sobic001G543500 Sobic002G088200 Sobic002G088200 Sobic004G033900--Sobic002G088200 Sobic004G033900--Sobic004G034500 Sobic004G033900--Sobic001G543500 Sobic005G052000 Sobic005G052000 Sobic004G033900--Sobic005G052000 Sobic004G033900--Sobic001G516800 Sobic010G108500 Sobic010G108500 Sobic004G033900--Sobic010G108500 Sobic001G310800 Sobic001G310800 Sobic004G033900--Sobic001G310800 Sobic004G033900--Sobic010G082800 Sobic006G118000 Sobic006G118000 Sobic004G033900--Sobic006G118000 Sobic010G079700 Sobic010G079700 Sobic001G316100--Sobic010G079700 Sobic001G255400 Sobic001G255400 Sobic001G316100--Sobic001G255400 Sobic004G270400 Sobic004G270400 Sobic001G316100--Sobic004G270400 Sobic004G055600 Sobic004G055600 Sobic001G316100--Sobic004G055600 Sobic001G316100--Sobic001G310800 Sobic001G407900 Sobic001G407900 Sobic001G316100--Sobic001G407900 Sobic001G316100--Sobic004G187100 Sobic003G255100 Sobic003G255100 Sobic001G316100--Sobic003G255100 Sobic003G089600 Sobic003G089600 Sobic001G316100--Sobic003G089600 Sobic002G040500 Sobic002G040500 Sobic009G206400--Sobic002G040500 Sobic006G165650 Sobic006G165650 Sobic009G206400--Sobic006G165650 Sobic010G060000 Sobic010G060000 Sobic009G206400--Sobic010G060000 Sobic006G074100 Sobic006G074100 Sobic009G206400--Sobic006G074100 Sobic003G437600 Sobic003G437600 Sobic009G206400--Sobic003G437600 Sobic003G325300 Sobic003G325300 Sobic009G206400--Sobic003G325300 Sobic009G206400--Sobic004G187100 Sobic003G382300 Sobic003G382300 Sobic009G206400--Sobic003G382300 Sobic009G206400--Sobic001G077100 Sobic010G244600 Sobic010G244600 Sobic003G336200--Sobic010G244600 Sobic003G336200--Sobic004G072000 Sobic003G336200--Sobic001G543500 Sobic003G336200--Sobic002G088200 Sobic003G107100 Sobic003G107100 Sobic003G336200--Sobic003G107100 Sobic009G255300 Sobic009G255300 Sobic003G336200--Sobic009G255300 Sobic005G169800 Sobic005G169800 Sobic003G336200--Sobic005G169800 Sobic003G336200--Sobic004G034500 Sobic007G204400 Sobic007G204400 Sobic003G336200--Sobic007G204400 Sobic002G256000 Sobic002G256000 Sobic010G082800--Sobic002G256000 Sobic005G021600 Sobic005G021600 Sobic010G082800--Sobic005G021600 Sobic010G082800--Sobic009G138900 Sobic009G253000 Sobic009G253000 Sobic010G082800--Sobic009G253000 Sobic008G063100 Sobic008G063100 Sobic010G082800--Sobic008G063100 Sobic003G421400 Sobic003G421400 Sobic010G082800--Sobic003G421400 Sobic002G038300 Sobic002G038300 Sobic010G082800--Sobic002G038300 Sobic002G386400 Sobic002G386400 Sobic010G082800--Sobic002G386400 Sobic002G195700 Sobic002G195700 Sobic010G082800--Sobic002G195700 Sobic008G022600 Sobic008G022600 Sobic001G077100--Sobic008G022600 Sobic001G077100--Sobic001G407900 Sobic001G077100--Sobic004G270400 Sobic001G077100--Sobic010G082800 Sobic001G339100 Sobic001G339100 Sobic001G077100--Sobic001G339100 Sobic007G076900 Sobic007G076900 Sobic001G077100--Sobic007G076900 Sobic004G017200 Sobic004G017200 Sobic001G077100--Sobic004G017200 Sobic003G088800 Sobic003G088800 Sobic001G077100--Sobic003G088800 Sobic001G077100--Sobic010G060000 Sobic007G023300 Sobic007G023300 Sobic001G357800--Sobic007G023300 Sobic001G357800--Sobic001G407900 Sobic003G187000 Sobic003G187000 Sobic001G357800--Sobic003G187000 Sobic010G265500 Sobic010G265500 Sobic001G357800--Sobic010G265500 Sobic004G193400 Sobic004G193400 Sobic001G357800--Sobic004G193400 Sobic001G498300 Sobic001G498300 Sobic001G357800--Sobic001G498300 Sobic006G280050 Sobic006G280050 Sobic001G357800--Sobic006G280050 Sobic004G314800 Sobic004G314800 Sobic001G357800--Sobic004G314800 Sobic001G357800--Sobic001G339100 Sobic009G138900--Sobic002G038300 Sobic002G384400 Sobic002G384400 Sobic009G138900--Sobic002G384400 Sobic001G161300 Sobic001G161300 Sobic009G138900--Sobic001G161300 Sobic009G138900--Sobic002G386400 Sobic006G204100 Sobic006G204100 Sobic009G138900--Sobic006G204100 Sobic008G072300 Sobic008G072300 Sobic009G138900--Sobic008G072300 Sobic009G234200 Sobic009G234200 Sobic009G138900--Sobic009G234200 Sobic006G197700 Sobic006G197700 Sobic009G138900--Sobic006G197700 Sobic009G138900--Sobic010G082800
Octagon: transcription factors


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