Gene annotation
Transcriptome id Sobic.010G108500.1
Synonym SbBBX19, SbBBX19;B-box (BBX) protein, B-box (BBX) protein, Sb10g009480
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5Z836
Pfam PF00643 PF06203
Panther DB PTHR31874 PTHR31874:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G25440 : B-box type zinc finger protein with CCT domain
RAP-DB (Rice) LOC_Os06g15330.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a007829 , Zm00025a017003 , Zm00025a050390 , Zm00025a042701
Brachypodium PNT74254 , KQK13611 , KQK18673
Barley HORVU4Hr1G007420.1 , HORVU4Hr1G007420.3 , HORVU4Hr1G007420.2 , HORVU4Hr1G007420.4
Wheat TraesCS4B02G045700 , TraesCS6B02G323400 , TraesCS4D02G046200 , TraesCS4A02G268500 , TraesCS6D02G274100 , TraesCS6D02G274100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G118000 expressed protein -
2 Sobic.004G033900 expressed protein -
3 Sobic.001G310800 lectin-like receptor kinase, putative, expressed -
4 Sobic.002G186600 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
5 Sobic.008G147101 - -
6 Sobic.002G088200 expressed protein -
7 Sobic.004G307700 cyclin-dependent kinase inhibitor, putative, expressed -
8 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
9 Sobic.009G010700 expressed protein -
10 Sobic.005G052000 serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
11 Sobic.004G016700 expressed protein -
12 Sobic.010G092100 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
13 Sobic.002G320200 cytochrome P450, putative, expressed -
14 Sobic.010G170600 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.002G116400 - -
16 Sobic.008G139900 expressed protein -
17 Sobic.003G397000 expressed protein -
18 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
19 Sobic.001G004500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
20 Sobic.001G020500 lectin protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic010G108500 Sobic010G108500 Sobic006G118000 Sobic006G118000 Sobic010G108500--Sobic006G118000 Sobic004G033900 Sobic004G033900 Sobic010G108500--Sobic004G033900 Sobic001G310800 Sobic001G310800 Sobic010G108500--Sobic001G310800 Sobic002G186600 Sobic002G186600 Sobic010G108500--Sobic002G186600 Sobic008G147101 Sobic008G147101 Sobic010G108500--Sobic008G147101 Sobic002G088200 Sobic002G088200 Sobic010G108500--Sobic002G088200 Sobic004G307700 Sobic004G307700 Sobic010G108500--Sobic004G307700 Sobic001G516800 Sobic001G516800 Sobic010G108500--Sobic001G516800 Sobic009G010700 Sobic009G010700 Sobic010G108500--Sobic009G010700 Sobic008G139900 Sobic008G139900 Sobic006G118000--Sobic008G139900 Sobic006G118000--Sobic002G186600 Sobic004G072000 Sobic004G072000 Sobic006G118000--Sobic004G072000 Sobic006G118000--Sobic010G108500 Sobic008G131200 Sobic008G131200 Sobic006G118000--Sobic008G131200 Sobic010G208000 Sobic010G208000 Sobic006G118000--Sobic010G208000 Sobic006G118000--Sobic001G516800 SobicK044200 SobicK044200 Sobic006G118000--SobicK044200 Sobic001G115800 Sobic001G115800 Sobic006G118000--Sobic001G115800 Sobic004G033900--Sobic002G088200 Sobic004G034500 Sobic004G034500 Sobic004G033900--Sobic004G034500 Sobic001G543500 Sobic001G543500 Sobic004G033900--Sobic001G543500 Sobic005G052000 Sobic005G052000 Sobic004G033900--Sobic005G052000 Sobic004G033900--Sobic001G516800 Sobic004G033900--Sobic010G108500 Sobic004G033900--Sobic001G310800 Sobic010G082800 Sobic010G082800 Sobic004G033900--Sobic010G082800 Sobic004G033900--Sobic006G118000 Sobic001G275200 Sobic001G275200 Sobic001G310800--Sobic001G275200 Sobic006G273000 Sobic006G273000 Sobic001G310800--Sobic006G273000 Sobic003G088800 Sobic003G088800 Sobic001G310800--Sobic003G088800 Sobic001G019300 Sobic001G019300 Sobic001G310800--Sobic001G019300 Sobic006G269400 Sobic006G269400 Sobic001G310800--Sobic006G269400 Sobic001G310800--Sobic005G052000 Sobic001G005500 Sobic001G005500 Sobic001G310800--Sobic001G005500 Sobic001G310800--Sobic009G010700 Sobic001G310800--Sobic004G033900 Sobic002G186600--Sobic008G139900 Sobic004G330400 Sobic004G330400 Sobic002G186600--Sobic004G330400 Sobic003G396900 Sobic003G396900 Sobic002G186600--Sobic003G396900 Sobic001G493800 Sobic001G493800 Sobic002G186600--Sobic001G493800 Sobic006G162700 Sobic006G162700 Sobic002G186600--Sobic006G162700 Sobic002G206200 Sobic002G206200 Sobic002G186600--Sobic002G206200 Sobic009G202900 Sobic009G202900 Sobic002G186600--Sobic009G202900 Sobic003G109400 Sobic003G109400 Sobic002G186600--Sobic003G109400 Sobic002G231800 Sobic002G231800 Sobic002G186600--Sobic002G231800 Sobic001G147400 Sobic001G147400 Sobic008G147101--Sobic001G147400 Sobic004G132400 Sobic004G132400 Sobic008G147101--Sobic004G132400 Sobic008G147101--Sobic010G108500 Sobic002G283800 Sobic002G283800 Sobic008G147101--Sobic002G283800 Sobic007G124000 Sobic007G124000 Sobic008G147101--Sobic007G124000 Sobic002G320200 Sobic002G320200 Sobic008G147101--Sobic002G320200 Sobic008G147101--Sobic001G516800 Sobic008G147101--Sobic006G118000 Sobic003G397000 Sobic003G397000 Sobic008G147101--Sobic003G397000 Sobic002G088200--Sobic001G543500 Sobic002G088200--Sobic001G516800 Sobic002G088200--Sobic004G033900 Sobic003G264700 Sobic003G264700 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic002G088200--Sobic006G118000 Sobic002G119500 Sobic002G119500 Sobic002G088200--Sobic002G119500 Sobic002G088200--Sobic001G147400 Sobic002G088200--Sobic010G208000 Sobic001G020500 Sobic001G020500 Sobic004G307700--Sobic001G020500 Sobic002G046700 Sobic002G046700 Sobic004G307700--Sobic002G046700 Sobic006G122900 Sobic006G122900 Sobic004G307700--Sobic006G122900 Sobic010G136900 Sobic010G136900 Sobic004G307700--Sobic010G136900 Sobic002G293900 Sobic002G293900 Sobic004G307700--Sobic002G293900 Sobic004G307700--Sobic007G124000 Sobic004G307700--Sobic008G147101 Sobic004G307700--Sobic010G108500 Sobic004G307700--Sobic004G033900 Sobic001G516800--Sobic010G208000 Sobic001G516800--Sobic002G283800 Sobic001G030200 Sobic001G030200 Sobic001G516800--Sobic001G030200 Sobic001G516800--Sobic001G147400 Sobic001G516800--Sobic004G034500 Sobic001G516800--Sobic002G088200 Sobic002G019900 Sobic002G019900 Sobic001G516800--Sobic002G019900 Sobic001G516800--Sobic001G543500 Sobic009G179800 Sobic009G179800 Sobic001G516800--Sobic009G179800 Sobic009G010700--Sobic001G275200 Sobic009G010700--Sobic003G088800 Sobic005G203900 Sobic005G203900 Sobic009G010700--Sobic005G203900 Sobic003G163500 Sobic003G163500 Sobic009G010700--Sobic003G163500 Sobic008G117300 Sobic008G117300 Sobic009G010700--Sobic008G117300 Sobic001G066600 Sobic001G066600 Sobic009G010700--Sobic001G066600 Sobic009G010700--Sobic006G273000 Sobic002G215000 Sobic002G215000 Sobic009G010700--Sobic002G215000 Sobic010G246600 Sobic010G246600 Sobic009G010700--Sobic010G246600
Octagon: transcription factors


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