Gene annotation
Transcriptome id Sobic.001G167800.1
Synonym OSB1
Functional annotation single-stranded DNA-binding protein, putative, expressed
UniProt A0A1B6QJD0
Pfam -
Panther DB PTHR10302 PTHR10302:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006260; DNA replication GO:0003697single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G47720 : Primosome PriB/single-strand DNA-binding
RAP-DB (Rice) LOC_Os03g41530.1 : single-stranded DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007411
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G183300 expressed protein -
2 Sobic.006G122500 methyltransferase domain containing protein, expressed -
3 Sobic.001G489900 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@expressed protein -
4 Sobic.002G104400 WRKY123, expressed -
5 Sobic.003G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.003G077600 WD domain, G-beta repeat domain containing protein, expressed K10140: DNA damage-binding protein 2
7 Sobic.003G336200 expressed protein -
8 Sobic.006G168500 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
9 Sobic.001G316100 expressed protein -
10 Sobic.001G044600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
11 Sobic.004G095800 - -
12 Sobic.004G187100 BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
13 Sobic.003G274700 lipase, putative, expressed -
14 Sobic.003G167632 - -
15 Sobic.001G374400 Heavy metal transport/detoxification superfamily protein(PubMedID : 26465154)@heavy metal-associated domain containing protein, expressed -
16 Sobic.010G060400 leucoanthocyanidin dioxygenase, putative, expressed -
17 Sobic.001G168000 OsFBD13 - F-box and FBD domain containing protein, expressed -
18 Sobic.001G491200 ABC transporter family protein, putative, expressed -
19 Sobic.010G244500 expressed protein -
20 Sobic.005G169800 GTPase of unknown function domain containing protein, putative, expressed K03665: GTPase


Gene co-expression network
sample Sobic001G167800 Sobic001G167800 Sobic004G183300 Sobic004G183300 Sobic001G167800--Sobic004G183300 Sobic006G122500 Sobic006G122500 Sobic001G167800--Sobic006G122500 Sobic001G489900 Sobic001G489900 Sobic001G167800--Sobic001G489900 Sobic002G104400 Sobic002G104400 Sobic001G167800--Sobic002G104400 Sobic003G089600 Sobic003G089600 Sobic001G167800--Sobic003G089600 Sobic003G077600 Sobic003G077600 Sobic001G167800--Sobic003G077600 Sobic003G336200 Sobic003G336200 Sobic001G167800--Sobic003G336200 Sobic006G168500 Sobic006G168500 Sobic001G167800--Sobic006G168500 Sobic001G316100 Sobic001G316100 Sobic001G167800--Sobic001G316100 Sobic002G104000 Sobic002G104000 Sobic004G183300--Sobic002G104000 Sobic004G183300--Sobic001G167800 Sobic005G155900 Sobic005G155900 Sobic004G183300--Sobic005G155900 Sobic003G110700 Sobic003G110700 Sobic004G183300--Sobic003G110700 Sobic008G011200 Sobic008G011200 Sobic004G183300--Sobic008G011200 Sobic003G310800 Sobic003G310800 Sobic004G183300--Sobic003G310800 Sobic010G279100 Sobic010G279100 Sobic004G183300--Sobic010G279100 Sobic003G254600 Sobic003G254600 Sobic004G183300--Sobic003G254600 Sobic003G161100 Sobic003G161100 Sobic004G183300--Sobic003G161100 Sobic006G049200 Sobic006G049200 Sobic006G122500--Sobic006G049200 Sobic001G252401 Sobic001G252401 Sobic006G122500--Sobic001G252401 Sobic010G006300 Sobic010G006300 Sobic006G122500--Sobic010G006300 Sobic010G162500 Sobic010G162500 Sobic006G122500--Sobic010G162500 Sobic004G289300 Sobic004G289300 Sobic006G122500--Sobic004G289300 Sobic004G342500 Sobic004G342500 Sobic006G122500--Sobic004G342500 Sobic003G285600 Sobic003G285600 Sobic006G122500--Sobic003G285600 Sobic003G403800 Sobic003G403800 Sobic006G122500--Sobic003G403800 Sobic001G193800 Sobic001G193800 Sobic006G122500--Sobic001G193800 Sobic001G489900--Sobic003G336200 Sobic001G489900--Sobic001G167800 Sobic004G165700 Sobic004G165700 Sobic001G489900--Sobic004G165700 Sobic001G168000 Sobic001G168000 Sobic001G489900--Sobic001G168000 Sobic003G264700 Sobic003G264700 Sobic001G489900--Sobic003G264700 Sobic002G088200 Sobic002G088200 Sobic001G489900--Sobic002G088200 Sobic010G082800 Sobic010G082800 Sobic001G489900--Sobic010G082800 Sobic001G000800 Sobic001G000800 Sobic001G489900--Sobic001G000800 Sobic003G413800 Sobic003G413800 Sobic001G489900--Sobic003G413800 Sobic001G186200 Sobic001G186200 Sobic002G104400--Sobic001G186200 Sobic001G455500 Sobic001G455500 Sobic002G104400--Sobic001G455500 Sobic005G127000 Sobic005G127000 Sobic002G104400--Sobic005G127000 Sobic001G388400 Sobic001G388400 Sobic002G104400--Sobic001G388400 Sobic007G205600 Sobic007G205600 Sobic002G104400--Sobic007G205600 Sobic002G104400--Sobic003G310800 Sobic003G342200 Sobic003G342200 Sobic002G104400--Sobic003G342200 Sobic004G248400 Sobic004G248400 Sobic002G104400--Sobic004G248400 Sobic001G006000 Sobic001G006000 Sobic002G104400--Sobic001G006000 Sobic003G107300 Sobic003G107300 Sobic003G089600--Sobic003G107300 Sobic010G244500 Sobic010G244500 Sobic003G089600--Sobic010G244500 Sobic008G015300 Sobic008G015300 Sobic003G089600--Sobic008G015300 Sobic002G074300 Sobic002G074300 Sobic003G089600--Sobic002G074300 Sobic004G011566 Sobic004G011566 Sobic003G089600--Sobic004G011566 Sobic010G270900 Sobic010G270900 Sobic003G089600--Sobic010G270900 Sobic001G093600 Sobic001G093600 Sobic003G089600--Sobic001G093600 Sobic009G154600 Sobic009G154600 Sobic003G089600--Sobic009G154600 Sobic004G055600 Sobic004G055600 Sobic003G089600--Sobic004G055600 Sobic006G141100 Sobic006G141100 Sobic003G077600--Sobic006G141100 Sobic010G056100 Sobic010G056100 Sobic003G077600--Sobic010G056100 Sobic009G038600 Sobic009G038600 Sobic003G077600--Sobic009G038600 Sobic003G077600--Sobic001G167800 Sobic004G046001 Sobic004G046001 Sobic003G077600--Sobic004G046001 Sobic008G140000 Sobic008G140000 Sobic003G077600--Sobic008G140000 Sobic006G213200 Sobic006G213200 Sobic003G077600--Sobic006G213200 Sobic002G139700 Sobic002G139700 Sobic003G077600--Sobic002G139700 Sobic007G129100 Sobic007G129100 Sobic003G077600--Sobic007G129100 Sobic010G244600 Sobic010G244600 Sobic003G336200--Sobic010G244600 Sobic004G072000 Sobic004G072000 Sobic003G336200--Sobic004G072000 Sobic001G543500 Sobic001G543500 Sobic003G336200--Sobic001G543500 Sobic003G336200--Sobic002G088200 Sobic003G107100 Sobic003G107100 Sobic003G336200--Sobic003G107100 Sobic009G255300 Sobic009G255300 Sobic003G336200--Sobic009G255300 Sobic005G169800 Sobic005G169800 Sobic003G336200--Sobic005G169800 Sobic004G034500 Sobic004G034500 Sobic003G336200--Sobic004G034500 Sobic007G204400 Sobic007G204400 Sobic003G336200--Sobic007G204400 Sobic001G535500 Sobic001G535500 Sobic006G168500--Sobic001G535500 Sobic004G208000 Sobic004G208000 Sobic006G168500--Sobic004G208000 Sobic005G126900 Sobic005G126900 Sobic006G168500--Sobic005G126900 Sobic008G064750 Sobic008G064750 Sobic006G168500--Sobic008G064750 Sobic004G153800 Sobic004G153800 Sobic006G168500--Sobic004G153800 Sobic003G344300 Sobic003G344300 Sobic006G168500--Sobic003G344300 Sobic003G160400 Sobic003G160400 Sobic006G168500--Sobic003G160400 Sobic005G167450 Sobic005G167450 Sobic006G168500--Sobic005G167450 Sobic004G272500 Sobic004G272500 Sobic006G168500--Sobic004G272500 Sobic010G079700 Sobic010G079700 Sobic001G316100--Sobic010G079700 Sobic001G255400 Sobic001G255400 Sobic001G316100--Sobic001G255400 Sobic004G270400 Sobic004G270400 Sobic001G316100--Sobic004G270400 Sobic001G316100--Sobic004G055600 Sobic001G310800 Sobic001G310800 Sobic001G316100--Sobic001G310800 Sobic001G407900 Sobic001G407900 Sobic001G316100--Sobic001G407900 Sobic004G187100 Sobic004G187100 Sobic001G316100--Sobic004G187100 Sobic003G255100 Sobic003G255100 Sobic001G316100--Sobic003G255100 Sobic001G316100--Sobic003G089600
Octagon: transcription factors


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